Numbers of viruses, sequences
Search terms: (spike[Title] OR “S gene”[Title] OR “S protein”[Title] OR “S glycoprotein”[Title] OR “S1 gene”[Title] OR “S1 protein”[Title] OR “S1 glycoprotein”[Title] OR peplomer[Title] OR peplomeric[Title] OR peplomers[All Title] OR “complete genome”[Title]) NOT (patent[Title] OR vaccine OR artificial OR construct OR recombinant[Title])
- 1585 viruses in family Coronaviridae identified through NCBI taxonomy.
- Of these 1585, 511 (32.2%) have at least one available spike protein nucleotide sequence.
- Of these 511, 54 (10.6%) have at least one recognised mammal or bird host in EID2 (which may be human host) NB: virtually all coronaviruses are viruses of birds/mammals
- Total sequence accessions: 16987, made up of 49213 individual protein coding sequences
| host recognised EID2 | no hosts EID2 | |
|---|---|---|
| no spike sequence | 64 | 1010 |
| spike sequence available | 54 | 457 |
| 1 | 2 | 3 | 4 | 5 | 6 | 8 | 10 | 11 | 12 | 13 | 14 | 16 | 17 | 18 | 19 | 23 | 26 | 27 | 30 | 31 | 32 | 33 | 35 | 43 | 51 | 54 | 60 | 66 | 69 | 71 | 86 | 150 | 172 | 183 | 361 | 393 | 660 | 679 | 739 | 753 | 844 | 991 | 3511 | 5952 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 392 | 51 | 7 | 5 | 3 | 5 | 2 | 2 | 2 | 2 | 2 | 1 | 2 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| childtaxa_name | n_seqs |
|---|---|
| Rocky Mountain bat coronavirus 61/2007/EF | 0 |
| Rocky Mountain bat coronavirus 15/2006/ML | 0 |
| Bat coronavirus Hipposideros/Ratcha-67/THA/2007 | 0 |
| Rm-Bat-CoV 429/2007/MV | 0 |
| Rm-Bat-CoV 09-07/2009/MV | 0 |
| Alphacoronavirus M.sch/A/Spain/2004 | 0 |
| Alphacoronavirus M.bly/B/Spain/2004 | 0 |
| Alphacoronavirus N.las/C/Spain/2007 | 0 |
| Alphacoronavirus N.las/D/Spain/2007 | 0 |
| Alphacoronavirus N.las/E/Spain/2007 | 0 |
| Alphacoronavirus N.las/F/Spain/2007 | 0 |
| Alphacoronavirus N.las/G/Spain/2007 | 0 |
| Alphacoronavirus M.dau/H/Spain/2007 | 0 |
| Alphacoronavirus M.myo/I/Spain/2007 | 0 |
| Alphacoronavirus P.kuh/Iprima/Spain/2007 | 0 |
| Alphacoronavirus P.sp/K/Spain/2007 | 0 |
| Alphacoronavirus H.sav/L/Spain/2007 | 0 |
| Betacoronavirus H.sav/J/Spain/2007 | 0 |
| Betacoronavirus E.isa/M/Spain/2007 | 0 |
| Avian infectious bronchitis virus (strain 6/82) | 0 |
| Avian infectious bronchitis virus (strain Beaudette) | 0 |
| Avian infectious bronchitis virus (strain Beaudette M42) | 0 |
| Avian infectious bronchitis virus (strain D274) | 0 |
| Avian infectious bronchitis virus (strain D3896) | 0 |
| Avian infectious bronchitis virus (strain KB8523) | 0 |
| Bovine coronavirus strain F15 | 0 |
| Bovine coronavirus strain L9 | 0 |
| Bovine coronavirus LY-138 | 0 |
| Bovine coronavirus Mebus | 0 |
| Bovine coronavirus strain Quebec | 0 |
| Bovine coronavirus strain vaccine | 0 |
| Murine hepatitis virus strain 1 | 0 |
| Murine hepatitis virus strain 3 | 0 |
| Murine hepatitis virus strain defective JHM | 0 |
| Murine hepatitis virus strain S | 0 |
| Porcine respiratory coronavirus (STRAIN RM4) | 0 |
| Porcine transmissible gastroenteritis coronavirus strain FS772/70 | 0 |
| Porcine transmissible gastroenteritis coronavirus strain Purdue | 0 |
| Bat coronavirus 2265/Philippines/2010 | 0 |
| Bat coronavirus 2231/Philippines/2010 | 0 |
| Bat coronavirus M.daubentonii/UK/Wyt/962A | 0 |
| Bat coronavirus M.daubentonii/UK/Wyt/964Co | 0 |
| Bat coronavirus M.daubentonii/UK/Wyt/971Co | 0 |
| Bat coronavirus M.daubentonii/UK/Wyt/972A | 0 |
| Bat coronavirus M.daubentonii/UK/Wyt/991C | 0 |
| Bat coronavirus M.nattereri/UK/Sav/1088A | 0 |
| Bat coronavirus M.nattereri/UK/Sav/1089B | 0 |
| Bat coronavirus M.nattereri/UK/Sav/1091C | 0 |
| Bat coronavirus M.nattereri/UK/Sav/1092B | 0 |
| Bat coronavirus M.nattereri/UK/Sav/1095A | 0 |
| Bat coronavirus M.nattereri/UK/Sav/1106A | 0 |
| Bat coronavirus M.nattereri/UK/Sav/1108A | 0 |
| Bat coronavirus M.nattereri/UK/Wyt/1011A | 0 |
| Bat coronavirus M.nattereri/UK/Wyt/1012B | 0 |
| Bat coronavirus M.nattereri/UK/Wyt/1018A | 0 |
| Bat coronavirus M.nattereri/UK/Wyt/1019A | 0 |
| Bat coronavirus M.nattereri/UK/Wyt/1020A | 0 |
| Bat coronavirus M.nattereri/UK/Wyt/1023A | 0 |
| Bat coronavirus Gabon/292/2009 | 0 |
| Bat coronavirus Gabon/390/2009 | 0 |
| Bat coronavirus Gabon/391/2009 | 0 |
| Bat coronavirus CAR/P 25/2009 | 0 |
| Bat coronavirus CAR/P 31/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus | 0 |
| Alphacoronavirus Perimyotis subflavus | 0 |
| Bat coronavirus HKU10 | 0 |
| Miniopterus bat coronavirus/South Africa/Irene/2009 | 0 |
| Mops bat coronavirus/South Africa/1364/2011 | 0 |
| Neoromicia bat coronavirus/South Africa/167/2007 | 0 |
| Rhinolophus bat coronavirus/Rwanda/441/2008 | 0 |
| Rhinolophus bat coronavirus/Rwanda/445/2008 | 0 |
| Coronavirus BCoV/PB675/Art_lit/PAN/2011 | 0 |
| Coronavirus BtCoV/BRA100/Car_per/BRA/2009 | 0 |
| Coronavirus BtCoV/BRA114/Car_bre/BRA/2009 | 0 |
| Coronavirus BtCoV/BRA118/Car_per/BRA/2009 | 0 |
| Coronavirus BtCoV/BRA119/Car_per/BRA/2009 | 0 |
| Coronavirus BtCoV/BRA182/Mol_ruf/BRA/2009 | 0 |
| Coronavirus BtCoV/BRA344/Car_bre/BRA/2009 | 0 |
| Coronavirus BtCoV/BRAP103/Mol_cur/BRA/2009 | 0 |
| Coronavirus BtCoV/KCR216/Car_per/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR230/Pte_par/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR24/Ano_geo/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR252/Car_per/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR253/Car_per/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR289/Ano_geo/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR291/Ano_geo/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR293/Ano_geo/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR370/Pte_par/CRC/2011 | 0 |
| Coronavirus BtCoV/KCR372/Car_per/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR90/Car_per/CRC/2010 | 0 |
| Coronavirus BtCoV/KCR91/Car_per/CRC/2010 | 0 |
| Coronavirus BtCoV/KP256/Art_jam/PAN/2010 | 0 |
| Coronavirus BtCoV/KP524/Art_jam/PAN/2010 | 0 |
| Coronavirus BtCoV/KP534/Art_lit/PAN/2010 | 0 |
| Coronavirus BtCoV/KP565/Art_jam/PAN/2010 | 0 |
| Coronavirus BtCoV/KP816/Phy_dis/PAN/2011 | 0 |
| Coronavirus BtCoV/KP817/Phy_dis/PAN/2011 | 0 |
| Coronavirus BtCoV/OCR11/Pte_par/CRC/2011 | 0 |
| Betacoronavirus BtCoV/KW2E-F53/Nyc_spec/GHA/2011 | 0 |
| Betacoronavirus BtCoV/KW2E-F82/Nyc_spec/GHA/2011 | 0 |
| Murine hepatitis virus strain 4 | 0 |
| Bat coronavirus Mr/Shanxi2011 | 0 |
| Bat coronavirus POA/2012/105 | 0 |
| Bat coronavirus POA/2012/127 | 0 |
| Bat coronavirus POA/2012/132 | 0 |
| Bat coronavirus POA/2012/143 | 0 |
| Bat coronavirus POA/2012/144 | 0 |
| Bat coronavirus POA/2012/44 | 0 |
| Bat coronavirus POA/2012/94 | 0 |
| Bat coronavirus POA/2012/96 | 0 |
| Bat coronavirus POA/2012/B01 | 0 |
| Bat coronavirus POA/2012/D09 | 0 |
| Bat coronavirus POA/2012/E05 | 0 |
| Bat coronavirus POA/2012/E07 | 0 |
| Bat coronavirus POA/2012/E11 | 0 |
| Bat coronavirus POA/2012/E9 | 0 |
| Bat coronavirus POA/2012/G01 | 0 |
| Bat coronavirus POA/2012/G03 | 0 |
| Coronavirus Mex_CoV-1 | 0 |
| Coronavirus Mex_CoV-10 | 0 |
| Coronavirus Mex_CoV-11a | 0 |
| Coronavirus Mex_CoV-2 | 0 |
| Coronavirus Mex_CoV-3 | 0 |
| Coronavirus Mex_CoV-4 | 0 |
| Coronavirus Mex_CoV-5a | 0 |
| Coronavirus Mex_CoV-5b | 0 |
| Coronavirus Mex_CoV-6 | 0 |
| Coronavirus Mex_CoV-7 | 0 |
| Coronavirus Mex_CoV-8 | 0 |
| Coronavirus Mex_CoV-9 | 0 |
| coronavirus Mex_CoV-11b | 0 |
| Munia coronavirus HKU13 | 0 |
| Thrush coronavirus HKU12 | 0 |
| Coronavirus Susurluk10 | 0 |
| Betacoronavirus BtCoV/KCR15/Pte_par/CRC/2012 | 0 |
| Betacoronavirus BtCoV/KCR155/Pte_par/CRC/2012 | 0 |
| Betacoronavirus BtCoV/KCR180/Pte_par/CRC/2012 | 0 |
| Betacoronavirus BtCoV/KCR22/Pte_par/CRC/2012 | 0 |
| Betacoronavirus BtCoV/KCR260/Car_per/CRC/2012 | 0 |
| Betacoronavirus BtCoV/Rhi_bla/BB98-22/BGR/2008 | 0 |
| Betacoronavirus BtCoV/Rhi_eur/BB98-92/BGR/2008 | 0 |
| Betacoronavirus BtCoV/Rhi_eur/BB98-98/BGR/2008 | 0 |
| Betacoronavirus BtCoV/Rhi_eur/BB99-04/BGR/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_fer/FR0711-B11/FRA/2011 | 0 |
| Betacoronavirus BtCoV/Rhi_fer/FR0711-B3/FRA/2011 | 0 |
| Betacoronavirus BtCoV/Rhi_fer/It1/ITA/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_fer/It13/ITA/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_fer/It15/ITA/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_fer/It17/ITA/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_fer/It2/ITA/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/R07-09/SPA/2010 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/R13-08/SPA/2010 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/R46-03/SPA/2010 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/R7-08/SPA/2010 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/R77-02/SPA/2010 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/R8-09/SPA/2010 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/Slo48/SLO/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/Slo52/SLO/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/Slo53/SLO/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/Slo54/SLO/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/Slo57/SLO/2009 | 0 |
| Betacoronavirus BtCoV/Rhi_hip/Slo69/SLO/2009 | 0 |
| Bat coronavirus M.rufus28/Brazil/2010 | 0 |
| Bat coronavirus P.davyi49/Mexico/2012 | 0 |
| Bat Coronavirus Rhhar/CII_KSA_004/Bisha/Saudi Arabia/2013 | 0 |
| Bat Coronavirus Taper/CII_KSA_287/Bisha/Saudi Arabia/2012 | 0 |
| Bat coronavirus Pikuh/CII_KSA_001/Riyadh/Saudi Arabia/2013 | 0 |
| Bat coronavirus Rhhar/CII_KSA_002/Bisha/Saudi Arabia/2013 | 0 |
| Bat coronavirus Rhhar/CII_KSA_003/Bisha/Saudi Arabia/2013 | 0 |
| Bat coronavirus Costa Rica | 0 |
| Coronavirus PgCoV-1 | 0 |
| Coronavirus PgCoV-2 | 0 |
| Coronavirus PgCoV-3 | 0 |
| Coronavirus PgCoV-4 | 0 |
| Alphacoronavirus Pipistrellus kuhlii/Italy/206645-41/2010 | 0 |
| Alphacoronavirus Pipistrellus kuhlii/Italy/206679-3/2010 | 0 |
| Betacoronavirus Nyctalus noctula/Italy/206679-5/2010 | 0 |
| Betacoronavirus Pipistrellus kuhlii/Italy/206645-27/2011 | 0 |
| Betacoronavirus Pipistrellus kuhlii/Italy/206645-29/2011 | 0 |
| Betacoronavirus Pipistrellus kuhlii/Italy/206645-3/2011 | 0 |
| Betacoronavirus Pipistrellus kuhlii/Italy/206645-53/2011 | 0 |
| Betacoronavirus Pipistrellus kuhlii/Italy/206645-54/2011 | 0 |
| Betacoronavirus Pipistrellus kuhlii/Italy/206645-63/2011 | 0 |
| Betacoronavirus Pipistrellus kuhlii/Italy/330375-15/2012 | 0 |
| Betacoronavirus Pipistrellus/Italy/49967-19/2010 | 0 |
| Betacoronavirus Rhinolophus hipposideros/Italy/187632-2/2012 | 0 |
| Betacoronavirus Rhinolophus hipposideros/Italy/196814/2011 | 0 |
| Betacoronavirus Rhinolophus hipposideros/Italy/243585/2012 | 0 |
| Betacoronavirus H.sav/Italy/206645-40/2011 | 0 |
| SARS bat coronavirus | 0 |
| Eurasian oystercatcher coronavirus | 0 |
| Betacoronavirus Eptesicus/13RS384_26/Italy/2012 | 0 |
| Alphacoronavirus Myotis/13rs384_31/Italy/2012 | 0 |
| Alphacoronavirus 2 | 0 |
| Bat coronavirus IFB2012-13F | 0 |
| Bat coronavirus IFB2012-17F | 0 |
| Bat coronavirus IFB2012-8F | 0 |
| Myotis daubentonii coronavirus | 0 |
| Myotis davidii coronavirus | 0 |
| Rhinolophus ferrumequinum coronavirus | 0 |
| Rhinolophus hipposideros coronavirus | 0 |
| Betacoronavirus JMH-2014 | 0 |
| BtMf-AlphaCoV/HeN2013-a | 0 |
| BtMf-AlphaCoV/HeN2013-b | 0 |
| BtMd-BetaCoV/HuB2013 | 0 |
| Anlong Ms bat coronavirus | 0 |
| Lushi Ml bat coronavirus | 0 |
| Neixiang Md bat coronavirus | 0 |
| Coronavirus BtCoV/B85/HUN/2013 | 0 |
| Coronavirus BtCoV/BS49/HUN/2013 | 0 |
| Coronavirus BtCoV/E63/HUN/2013 | 0 |
| Coronavirus BtCoV/M67/HUN/2013 | 0 |
| Coronavirus BtCoV/M8/HUN/2013 | 0 |
| Coronavirus BtCoV/M9/HUN/2013 | 0 |
| Coronavirus BtCoV/V16/HUN/2013 | 0 |
| Mallard coronavirus | 0 |
| Bean goose coronavirus | 0 |
| Alphacoronavirus BtCoV/GrNC1/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/GrNC2/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/GrNC3/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/GrNC4/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/GrNC5/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/GrNC6/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/GrNC7/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/GrNC8/Neo_cap/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/MSTM2/Min_nat/RSA/2010 | 0 |
| Alphacoronavirus BtCoV/MSTM6/Min_nat/RSA/2010 | 0 |
| Alphacoronavirus BtCoV/NCL_MCO1/Mop_con/RSA/2012 | 0 |
| Alphacoronavirus BtCoV/VH_NC2/Neo_cap/RSA/2012 | 0 |
| Bat Hp-betacoronavirus/Zhejiang2013-1 | 0 |
| Bat Hp-betacoronavirus/Zhejiang2013-2 | 0 |
| Bat Hp-betacoronavirus/Zhejiang2013-3 | 0 |
| Bat Hp-betacoronavirus/Zhejiang2013-4 | 0 |
| Bat Hp-betacoronavirus/Zhejiang2013-5 | 0 |
| Alphacoronavirus TadaridaM4 | 0 |
| Avian infectious bronchitis virus (strain Beaudette CK) | 0 |
| Suncus coronavirus | 0 |
| Bat coronavirus BEM001F | 0 |
| Bat coronavirus ANK036F | 0 |
| Bat coronavirus ANK047F | 0 |
| Bat coronavirus BEM073F | 0 |
| Bat coronavirus BEM074F | 0 |
| Bat coronavirus BEM077F | 0 |
| Bat coronavirus ANK081F | 0 |
| Bat coronavirus BEM003F | 0 |
| Bat coronavirus ANK011F | 0 |
| Bat coronavirus ANK045F | 0 |
| Bat coronavirus MAH051F | 0 |
| Bat coronavirus MAH056F | 0 |
| Bat coronavirus MAH058F | 0 |
| Bat coronavirus BEM070F | 0 |
| Goose-dominant Coronavirus | 0 |
| Pigeon-dominant Coronavirus | 0 |
| Duck-dominant coronavirus | 0 |
| Coronavirus Hare_CoV/La06_377/Lep_gra/ESP/2006 | 0 |
| Coronavirus Hare_CoV/La06_378/Lep_gra/ESP/2006 | 0 |
| Coronavirus Hare_CoV/La06_379/Lep_gra/ESP/2006 | 0 |
| Coronavirus Hare_CoV/La06_380/Lep_gra/ESP/2006 | 0 |
| Coronavirus Hare_CoV/La06_382/Lep_gra/ESP/2006 | 0 |
| Coronavirus Hare_CoV/La06_383/Lep_gra/ESP/2006 | 0 |
| Coronavirus Hare_CoV/La08_60/Lep_gra/ESP/2008 | 0 |
| Coronavirus Hare_CoV/La08_96/Lep_gra/ESP/2008 | 0 |
| Coronavirus Hare_CoV/La08_99/Lep_gra/ESP/2008 | 0 |
| Coronavirus RCoV/Bor473/Rat_rat/MYS/2012 | 0 |
| Coronavirus RCoV/D_RMU10_1055/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1087/Apo_fla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1182/Mic_agr/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1222/Mus_dom/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1226/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1228/Mus_dom/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1919/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1940/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1972/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1974/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1985/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1989/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_1993/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_2065/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_2066/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_2070/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_2089/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_590/Mic_arv/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_592/Mic_arv/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_974/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/D_RMU10_986/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/KS10_2636/Mic_arv/GER/2010 | 0 |
| Coronavirus RCoV/KS10_2743/Mic_arv/GER/2010 | 0 |
| Coronavirus RCoV/KS10_2810/Mic_arv/GER/2010 | 0 |
| Coronavirus RCoV/KS10_2864/Myo_glar/GER/2010 | 0 |
| Coronavirus RCoV/KS11_0514/Mic_arv/GER/2011 | 0 |
| Coronavirus RCoV/KS11_0997/Apo_agr/GER/2011 | 0 |
| Coronavirus RCoV/LEO/Rat_sik/CHN/2007 | 0 |
| Coronavirus RCoV/Lmg115/Sig_spec/MEX/2011 | 0 |
| Coronavirus RCoV/NL_69/Mic_arv/NED/2007 | 0 |
| Coronavirus RCoV/NSP32/Rha_pum/RSA/2008 | 0 |
| Coronavirus RCoV/NSP63/Rha_pum/RSA/2008 | 0 |
| Coronavirus RCoV/NSP65/Rha_pum/RSA/2008 | 0 |
| Coronavirus RCoV/RMU10_2010/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/RMU10_3052/Apo_fla/GER/2010 | 0 |
| Coronavirus RCoV/RMU10_3147/Apo_fla/GER/2010 | 0 |
| Coronavirus RCoV/RMU10_3212/Myo_gla/GER/2010 | 0 |
| Coronavirus RCoV/RMU10_620/Apo_agr/GER/2010 | 0 |
| Coronavirus RCoV/SPB40/Liomys_spec/MEX/2011 | 0 |
| Coronavirus RCoV/TP3_22/Ban_ind/THA/2005 | 0 |
| Coronavirus RCoV/TP3_26/Rat_rat/THA/2005 | 0 |
| Coronavirus Rabbit_CoV/La06_256/Ory_cun/ESP/2006 | 0 |
| Coronavirus Rabbit_CoV/La09_24/Ory_cun/ESP/2009 | 0 |
| Coronavirus Rabbit_CoV/La09_31/Ory_cun/ESP/2009 | 0 |
| Coronavirus Rabbit_CoV/La09_32/Ory_cun/ESP/2009 | 0 |
| Coronavirus Rabbit_CoV/La09_48/Ory_cun/ESP/2009 | 0 |
| Alphacoronavirus Pip1_Cr_FR_2014 | 0 |
| Alphacoronavirus Pip2_Cr_FR_2014 | 0 |
| Alphacoronavirus Pip3_M_FR_2014 | 0 |
| Deltacoronavirus B07 | 0 |
| Deltacoronavirus B04 | 0 |
| Myotis Bat Alphacoronavirus strain MJ_26C | 0 |
| Myotis Bat Alphacoronavirus strain MJ_27C | 0 |
| Myotis Bat Alphacoronavirus strain MJ_2C | 0 |
| Myotis Bat Alphacoronavirus strain MJ_51C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_10C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_11C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_12C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_13C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_15C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_16C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_17C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_18C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_19C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_20C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_21C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_31C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_33C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_34C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_39C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_3C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_41C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_42C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_44C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_45C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_46C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_47C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_48C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_50C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_54C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_5C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_7C | 0 |
| Myotis Bat Alphacoronavirus strain YNXY_8C | 0 |
| Rhinolophus Bat Alphacoronavirus strain MJ_69C | 0 |
| Rousettus Bat Alphacoronavirus strain ML_32I | 0 |
| Rousettus Bat Betacoronavirus ML_56I | 0 |
| Rousettus Bat Betacoronavirus strain ML_101I | 0 |
| Rousettus Bat Betacoronavirus strain ML_3I | 0 |
| Rousettus Bat Betacoronavirus strain ML_44I | 0 |
| Rousettus Bat Betacoronavirus strain ML_70I | 0 |
| Rousettus Bat Betacoronavirus strain ML_7I | 0 |
| Rousettus Bat Betacoronavirus strain ML_83I | 0 |
| Hipposideros Bat Alphacoronavirus strain MJ_55C | 0 |
| Hipposideros Bat Alphacoronavirus strain MJ_67C | 0 |
| Coronavirus PREDICT_CoV-49 | 0 |
| Coronavirus PREDICT_CoV-50 | 0 |
| Bat coronavirus M.bech/GER/8355/2014 | 0 |
| Bat coronavirus M.nat/GER/3856/2014 | 0 |
| Bat coronavirus M.nat/GER/533A/2014 | 0 |
| Bat coronavirus M.nat/GER/F0BF/2014 | 0 |
| Bat coronavirus P.nat/GER/1048/2013 | 0 |
| Bat coronavirus P.pyg/GER/9848/2014 | 0 |
| Bat coroanvirus HpBtCoV/3740-1 | 0 |
| Bat coroanvirus MfulBtCoV/3709 | 0 |
| Bat coroanvirus MsBtCoV/4001-2 | 0 |
| Bat coroanvirus RaBtCoV/4307-2 | 0 |
| Bat coronavirus HpBtCoV/3723 | 0 |
| Bat coronavirus HpBtCoV/3740-2 | 0 |
| Bat coronavirus MfusBtCoV 4040 | 0 |
| Bat coronavirus MfusBtCoV/4023-2 | 0 |
| Bat coronavirus MsBtCoV/4039 | 0 |
| Bat coronavirus RaBtCoV/3750 | 0 |
| Bat coronavirus RaBtCoV/4307-1 | 0 |
| Hipposideros bat coronavirus BtCoV/3723 | 0 |
| Hipposideros bat coronavirus BtCoV/3740-1 | 0 |
| Hipposideros bat coronavirus BtCoV/3740-2 | 0 |
| Miniopterus bat coronavirus BtCoV/3709 | 0 |
| Miniopterus bat coronavirus BtCoV/3728-1 | 0 |
| Miniopterus bat coronavirus BtCoV/3728-2 | 0 |
| Miniopterus bat coronavirus BtCoV/3736-1 | 0 |
| Miniopterus bat coronavirus BtCoV/3736-2 | 0 |
| Miniopterus bat coronavirus BtCoV/3759-1 | 0 |
| Miniopterus bat coronavirus BtCoV/3759-2 | 0 |
| Miniopterus bat coronavirus BtCoV/3760-1 | 0 |
| Miniopterus bat coronavirus BtCoV/3760-2 | 0 |
| Miniopterus bat coronavirus BtCoV/3767 | 0 |
| Miniopterus bat coronavirus BtCoV/3983 | 0 |
| Miniopterus bat coronavirus BtCoV/4001-1 | 0 |
| Miniopterus bat coronavirus BtCoV/4001-2 | 0 |
| Miniopterus bat coronavirus BtCoV/4023-1 | 0 |
| Miniopterus bat coronavirus BtCoV/4023-2 | 0 |
| Miniopterus bat coronavirus BtCoV/4036-1 | 0 |
| Miniopterus bat coronavirus BtCoV/4036-2 | 0 |
| Miniopterus bat coronavirus BtCoV/4039 | 0 |
| Miniopterus bat coronavirus BtCoV/4040 | 0 |
| Miniopterus bat coronavirus BtCoV/4056-1 | 0 |
| Miniopterus bat coronavirus BtCoV/4056-2 | 0 |
| Miniopterus bat coronavirus BtCoV/4068-1 | 0 |
| Miniopterus bat coronavirus BtCoV/4068-2 | 0 |
| Miniopterus bat coronavirus BtCov/3710 | 0 |
| Rhinolophus bat coronavirus BtCoV/3716 | 0 |
| Rhinolophus bat coronavirus BtCoV/3750 | 0 |
| Rhinolophus bat coronavirus BtCoV/3772 | 0 |
| Rhinolophus bat coronavirus BtCoV/3992-1 | 0 |
| Rhinolophus bat coronavirus BtCoV/3992-2 | 0 |
| Rhinolophus bat coronavirus BtCoV/3994 | 0 |
| Rhinolophus bat coronavirus BtCoV/4017-1 | 0 |
| Rhinolophus bat coronavirus BtCoV/4017-2 | 0 |
| Rhinolophus bat coronavirus BtCoV/4030-1 | 0 |
| Rhinolophus bat coronavirus BtCoV/4030-2 | 0 |
| Rhinolophus bat coronavirus BtCoV/4060 | 0 |
| Rhinolophus bat coronavirus BtCoV/4307-1 | 0 |
| Rhinolophus bat coronavirus BtCoV/4307-2 | 0 |
| Rhinolophus bat coronavirus BtCoV/4991 | 0 |
| Rhinolophus bat coronavirus BtCov/3990 | 0 |
| Bat betacoronavirus | 0 |
| Alphacoronavirus TT-2016a | 0 |
| Bat coronavirus/2173/2014/Cynomops planirostris/Brazil | 0 |
| Bat coronavirus/2218/2014/Cynomops planirostris/Brazil | 0 |
| Bat coronavirus/4292/2013/Desmodus rotundus/Brazil | 0 |
| Bat coronavirus/4620/2014/Glossophaga soricina/Brazil | 0 |
| Bat coronavirus/4702/2013/Cynomops abrasus/Brazil | 0 |
| Bat coronavirus/5026/2013/Cynomops abrasus/Brazil | 0 |
| Kerivoula titania coronavirus | 0 |
| Miniopterus fuliginosus coronavirus | 0 |
| Myotis latirostis coronavirus | 0 |
| Rhinolophus monoceros coronavirus | 0 |
| Bat coronavirus Art.lit/1816/BRA/2010 | 0 |
| Bat coronavirus Art.lit/2064/BRA/2011 | 0 |
| Bat coronavirus Art.lit/2294/BRA/2012 | 0 |
| Bat coronavirus Car.per/1514/BRA/2011 | 0 |
| Bat coronavirus Car.per/1516/BRA/2011 | 0 |
| Bat coronavirus Car.per/1599/BRA/2012 | 0 |
| Bat coronavirus Eum.gla/242/BRA/2013 | 0 |
| Bat coronavirus Glo.sor/100/BRA/2014 | 0 |
| Bat coronavirus Mol.ruf/63/BRA/2014 | 0 |
| Bat coronavirus Mol.ruf/92/BRA/2013 | 0 |
| Bat coronavirus Myo.nig/117/BRA/2013 | 0 |
| Bat coronavirus Myo.rip/259/BRA/2013 | 0 |
| Bat coronavirus Stu.lil/1573/BRA/2012 | 0 |
| Bat coronavirus Stu.lil/1613/BRA/2012 | 0 |
| Bat coronavirus Stu.lil/1617/BRA/2012 | 0 |
| Mink coronavirus 1 | 0 |
| Bat coronavirus CDPHE15 | 0 |
| Bat alphacoronavirus/UF-FWC/2016/3 | 0 |
| Calidris alba coronavirus | 0 |
| Rynchops niger coronavirus | 0 |
| Calidris fuscicollis coronavirus | 0 |
| Anser cygnoides coronavirus | 0 |
| Dromedary camel coronavirus | 0 |
| Coronavirus JC02 | 0 |
| Coronavirus JC30 | 0 |
| Coronavirus JC54 | 0 |
| Coronavirus JC66 | 0 |
| Coronavirus JC81 | 0 |
| Pipistrellus bat alphacoronavirus | 0 |
| Tylonycteris bat alphacoronavirus | 0 |
| Coronavirus HKU23 | 0 |
| Coronavirus PREDICT CoV-10 | 0 |
| Coronavirus PREDICT CoV-11 | 0 |
| Coronavirus PREDICT CoV-12 | 0 |
| Coronavirus PREDICT CoV-13 | 0 |
| Coronavirus PREDICT CoV-14 | 0 |
| Coronavirus PREDICT CoV-15 | 0 |
| Coronavirus PREDICT CoV-17 | 0 |
| Coronavirus PREDICT CoV-18 | 0 |
| Coronavirus PREDICT CoV-19 | 0 |
| Coronavirus PREDICT CoV-2 | 0 |
| Coronavirus PREDICT CoV-20 | 0 |
| Coronavirus PREDICT CoV-21 | 0 |
| Coronavirus PREDICT CoV-22 | 0 |
| Coronavirus PREDICT CoV-23 | 0 |
| Coronavirus PREDICT CoV-24 | 0 |
| Coronavirus PREDICT CoV-25 | 0 |
| Coronavirus PREDICT CoV-27 | 0 |
| Coronavirus PREDICT CoV-28 | 0 |
| Coronavirus PREDICT CoV-29 | 0 |
| Coronavirus PREDICT CoV-30 | 0 |
| Coronavirus PREDICT CoV-32 | 0 |
| Coronavirus PREDICT CoV-33 | 0 |
| Coronavirus PREDICT CoV-34 | 0 |
| Coronavirus PREDICT CoV-35 | 0 |
| Coronavirus PREDICT CoV-36 | 0 |
| Coronavirus PREDICT CoV-37 | 0 |
| Coronavirus PREDICT CoV-38 | 0 |
| Coronavirus PREDICT CoV-39 | 0 |
| Coronavirus PREDICT CoV-4 | 0 |
| Coronavirus PREDICT CoV-40 | 0 |
| Coronavirus PREDICT CoV-41 | 0 |
| Coronavirus PREDICT CoV-42 | 0 |
| Coronavirus PREDICT CoV-43 | 0 |
| Coronavirus PREDICT CoV-44 | 0 |
| Coronavirus PREDICT CoV-45 | 0 |
| Coronavirus PREDICT CoV-46 | 0 |
| Coronavirus PREDICT CoV-47 | 0 |
| Coronavirus PREDICT CoV-48 | 0 |
| Coronavirus PREDICT CoV-51 | 0 |
| Coronavirus PREDICT CoV-52 | 0 |
| Coronavirus PREDICT CoV-53 | 0 |
| Coronavirus PREDICT CoV-54 | 0 |
| Coronavirus PREDICT CoV-55 | 0 |
| Coronavirus PREDICT CoV-56 | 0 |
| Coronavirus PREDICT CoV-57 | 0 |
| Coronavirus PREDICT CoV-58 | 0 |
| Coronavirus PREDICT CoV-59 | 0 |
| Coronavirus PREDICT CoV-60 | 0 |
| Coronavirus PREDICT CoV-61 | 0 |
| Coronavirus PREDICT CoV-62 | 0 |
| Coronavirus PREDICT CoV-63 | 0 |
| Coronavirus PREDICT CoV-64 | 0 |
| Coronavirus PREDICT CoV-65 | 0 |
| Coronavirus PREDICT CoV-66 | 0 |
| Coronavirus PREDICT CoV-67 | 0 |
| Coronavirus PREDICT CoV-68 | 0 |
| Coronavirus PREDICT CoV-70 | 0 |
| Coronavirus PREDICT CoV-71 | 0 |
| Kenya bat coronavirus/BtKY56/BtKY55 | 0 |
| Kenya bat coronavirus BtKY33/2006 | 0 |
| Kenya bat coronavirus/KY33/2006 | 0 |
| Alphacoronavirus Trinidad/1FY2BA/2007 | 0 |
| Bat coronavirus 1 | 0 |
| SARS-related bat coronavirus RsSHC014 | 0 |
| SARS-related betacoronavirus Rp3/2004 | 0 |
| Myotis alphacoronavirus | 0 |
| Bat coronavirus A977/A970 | 0 |
| Vespertilionid betacoronavirus | 0 |
| Neotropic cormorant coronavirus | 0 |
| Rhinolophus pusillus coronavirus | 0 |
| Bat coronavirus GCCDC1 | 0 |
| SARS coronavirus Vietnam | 0 |
| SARS coronavirus Taiwan | 0 |
| SARS coronavirus Tor2 | 0 |
| SARS coronavirus Hong Kong/03/2003 | 0 |
| SARS coronavirus BJ02 | 0 |
| SARS coronavirus BJ03 | 0 |
| SARS coronavirus BJ04 | 0 |
| Porcine epidemic diarrhea virus CV777 | 0 |
| Porcine epidemic diarrhea virus Br1/87 | 0 |
| Chicken enteric coronavirus | 0 |
| Bovine coronavirus G95 | 0 |
| Porcine hemagglutinating encephalomyelitis virus (strain IAF-404) | 0 |
| Porcine hemagglutinating encephalomyelitis virus (strain 67N) | 0 |
| SARS coronavirus Taiwan JC-2003 | 0 |
| Bovine coronavirus LSU | 0 |
| Bovine coronavirus strain OK | 0 |
| Bovine coronavirus strain Ontario | 0 |
| Murine coronavirus strain DVIM | 0 |
| Avian infectious bronchitis virus (strain H52) | 0 |
| Avian infectious bronchitis virus (strain SAIB20) | 0 |
| Avian infectious bronchitis virus (strain V18/91) | 0 |
| Avian infectious bronchitis virus (strain Vic S) | 0 |
| Turkey coronavirus (strain Indiana) | 0 |
| Turkey coronavirus (strain Minnesota) | 0 |
| Turkey coronavirus (strain NC95) | 0 |
| Bovine coronavirus (strain OK-0514-3) | 0 |
| Rat coronavirus (strain NJ) | 0 |
| Avian infectious bronchitis virus (strain Arkansas 99) | 0 |
| Avian infectious bronchitis virus (strain D1466) | 0 |
| Civet SARS CoV SZ3/2003 | 0 |
| SARS coronavirus SZ13 | 0 |
| Civet SARS CoV SZ16/2003 | 0 |
| SARS coronavirus SZ1 | 0 |
| SARS coronavirus GZ43 | 0 |
| SARS coronavirus GZ60 | 0 |
| SARS coronavirus HKU-36871 | 0 |
| SARS coronavirus HKU-65806 | 0 |
| SARS coronavirus HKU-66078 | 0 |
| SARS coronavirus GZ50 | 0 |
| Bovine coronavirus (strain LSU-94LSS-051) | 0 |
| Bovine enteric coronavirus (strain 98TXSF-110-ENT) | 0 |
| Bovine respiratory coronavirus (strain 98TXSF-110-LUN) | 0 |
| Avian infectious bronchitis virus (strain DE072) | 0 |
| SARS coronavirus TWC | 0 |
| SARS coronavirus Sin2774 | 0 |
| SARS coronavirus Sin2748 | 0 |
| SARS coronavirus Sin2679 | 0 |
| SARS coronavirus Sin2677 | 0 |
| SARS coronavirus Sin2500 | 0 |
| Avian infectious bronchitis virus (strain D41) | 0 |
| SARS coronavirus ZMY 1 | 0 |
| SARS coronavirus BJ2232 | 0 |
| SARS coronavirus TWC2 | 0 |
| SARS coronavirus TWC3 | 0 |
| SARS coronavirus HPZ-2003 | 0 |
| SARS coronavirus WHU | 0 |
| Coronavirus SarBatCoV1 | 0 |
| SARS coronavirus GZ-A | 0 |
| SARS coronavirus GZ-B | 0 |
| SARS coronavirus GZ-C | 0 |
| SARS coronavirus GZ-D | 0 |
| SARS coronavirus HGZ8L1-A | 0 |
| SARS coronavirus HGZ8L1-B | 0 |
| SARS coronavirus HSZ2-A | 0 |
| SARS coronavirus HSZ-A | 0 |
| SARS coronavirus HSZ-Bb | 0 |
| SARS coronavirus HSZ-Cb | 0 |
| SARS coronavirus HZS2-Fb | 0 |
| SARS coronavirus JMD | 0 |
| SARS coronavirus HZS2-D | 0 |
| SARS coronavirus HZS2-E | 0 |
| SARS coronavirus HZS2-Fc | 0 |
| SARS coronavirus HZS2-C | 0 |
| SARS coronavirus HGZ8L2 | 0 |
| SARS coronavirus HSZ-Bc | 0 |
| SARS coronavirus HSZ-Cc | 0 |
| SARS coronavirus ZS-B | 0 |
| SARS coronavirus ZS-A | 0 |
| SARS coronavirus LC1 | 0 |
| SARS coronavirus LC2 | 0 |
| SARS coronavirus LC3 | 0 |
| SARS coronavirus LC4 | 0 |
| SARS coronavirus LC5 | 0 |
| SARS coronavirus ZS-C | 0 |
| SARS coronavirus HZS2-Bb | 0 |
| Rhinolophus ferrumequinum alphacoronavirus HuB-2013 | 0 |
| Myotis ricketti alphacoronavirus Sax-2011 | 0 |
| Nyctalus velutinus alphacoronavirus SC-2013 | 0 |
| NL63-related bat coronavirus strain BtKYNL63-9b | 0 |
| China Rattus coronavirus HKU24 | 0 |
| Bat Hp-betacoronavirus Zhejiang2013 | 0 |
| Rousettus bat coronavirus GCCDC1 | 0 |
| Alphacoronavirus L232 | 0 |
| Alphacoronavirus PLMg1 | 0 |
| SARS coronavirus HB | 0 |
| SARS coronavirus SoD | 0 |
| SARS coronavirus Sino3-11 | 0 |
| SARS coronavirus Sino1-11 | 0 |
| SARS coronavirus GD69 | 0 |
| SARS coronavirus HC/SZ/61/03 | 0 |
| Betacoronavirus BtCoV22/29 | 0 |
| Gull coronavirus | 0 |
| Acinonyx jubatus coronavirus | 0 |
| SARS coronavirus TW | 0 |
| SARS coronavirus sf099 | 0 |
| SARS coronavirus xw002 | 0 |
| SARS coronavirus Sin0409 | 0 |
| SARS coronavirus Sin_WNV | 0 |
| SARS coronavirus Sin842 | 0 |
| SARS coronavirus Sin852 | 0 |
| SARS coronavirus Sin3408 | 0 |
| SARS coronavirus Sin3765V | 0 |
| SARS coronavirus Sin848 | 0 |
| SARS coronavirus Sin849 | 0 |
| SARS coronavirus Sin3725V | 0 |
| SARS coronavirus SinP1 | 0 |
| SARS coronavirus SinP2 | 0 |
| SARS coronavirus SinP3 | 0 |
| SARS coronavirus SinP4 | 0 |
| SARS coronavirus SinP5 | 0 |
| SARS coronavirus Sin845 | 0 |
| SARS coronavirus Sin846 | 0 |
| SARS coronavirus Sin847 | 0 |
| SARS coronavirus Sin850 | 0 |
| SARS coronavirus Sin3408L | 0 |
| Chalinolobus gouldii alphacoronavirus | 0 |
| Vespadelus baverstocki alphacoronavirus | 0 |
| Vespadelus regulus alphacoronavirus | 0 |
| Chalinolobus morio alphacoronavirus | 0 |
| Falsistrellus mackenziei alphacoronavirus | 0 |
| Coronavirus PREDICT CoV-85 | 0 |
| Human coronavirus 3363/2000/NL | 0 |
| Human coronavirus 1196/2001/NL | 0 |
| SARS coronavirus GZ0401 | 0 |
| Enteric coronavirus | 0 |
| SARS coronavirus GZ0402 | 0 |
| SARS coronavirus PC4-13 | 0 |
| SARS coronavirus PC4-136 | 0 |
| SARS coronavirus PC4-227 | 0 |
| Goose coronavirus | 0 |
| Bird droppings coronavirus | 0 |
| Human coronavirus type 5 | 0 |
| Avian infectious bronchitis virus (strain GRAY) | 0 |
| Avian infectious bronchitis virus (strain PORTUGAL/322/82) | 0 |
| Avian infectious bronchitis virus (strain UK/123/82) | 0 |
| Avian infectious bronchitis virus (strain UK/142/86) | 0 |
| Avian infectious bronchitis virus (strain UK/167/84) | 0 |
| Avian infectious bronchitis virus (strain UK/183/66) | 0 |
| Avian infectious bronchitis virus (strain UK/68/84) | 0 |
| Bat coronavirus ZS-2005 | 0 |
| Canine enteric coronavirus K378 | 0 |
| Feline enteric coronavirus (strain 79-1683) | 0 |
| Feline infectious peritonitis virus (strain 79-1146) | 0 |
| Murine hepatitis virus strain JHMV / variant CL-2 | 0 |
| Porcine respiratory coronavirus (strain 86/137004 / British isolate) | 0 |
| Porcine transmissible gastroenteritis coronavirus strain Miller | 0 |
| Porcine transmissible gastroenteritis coronavirus strain Neb72-RT | 0 |
| Rat coronavirus (strain 681) | 0 |
| Bat SARS coronavirus Rp1 | 0 |
| Bat SARS coronavirus Rp2 | 0 |
| Parrot coronavirus AV71/99 | 0 |
| Canine enteric coronavirus INSAVC-1 | 0 |
| Human coronavirus NO | 0 |
| Human coronavirus NO/1055/04 | 0 |
| Human coronavirus NO/0003/05 | 0 |
| Human coronavirus NO/0749/04 | 0 |
| Human coronavirus NO/0848/04 | 0 |
| Human coronavirus NO/1917/04 | 0 |
| Human coronavirus NO/0835/04 | 0 |
| Human coronavirus NO/0341/04 | 0 |
| Human coronavirus NO/0053/04 | 0 |
| Human coronavirus NO/0398/05 | 0 |
| Human coronavirus NO/0023/05 | 0 |
| Human coronavirus NO/0193/05 | 0 |
| Human coronavirus NO/2708/04 | 0 |
| Human coronavirus NO/0733/05 | 0 |
| Human coronavirus NO/0643/05 | 0 |
| Human coronavirus NO/0867/04 | 0 |
| SARS coronavirus GDH-BJH01 | 0 |
| Bat coronavirus China 2005 | 0 |
| Bat coronavirus (BtCoV/A504/2005) | 0 |
| Bat coronavirus (BtCoV/A535/2005) | 0 |
| Bat coronavirus (BtCoV/A604/2005) | 0 |
| Bat coronavirus (BtCoV/A613/2005) | 0 |
| Bat coronavirus (BtCoV/A619/2005) | 0 |
| Bat coronavirus (BtCoV/A620/2005) | 0 |
| Bat coronavirus (BtCoV/A629/2005) | 0 |
| Bat coronavirus (BtCoV/A632/2005) | 0 |
| Bat coronavirus (BtCoV/A633/2005) | 0 |
| Bat coronavirus (BtCoV/A634/2005) | 0 |
| Bat coronavirus (BtCoV/A754/2005) | 0 |
| Bat coronavirus (BtCoV/A819/2005) | 0 |
| Bat coronavirus (BtCoV/A821/2005) | 0 |
| Bat coronavirus (BtCoV/860/2005) | 0 |
| Bat coronavirus (BtCoV/A893/2005) | 0 |
| Bat coronavirus (BtCoV/A894/2005) | 0 |
| Bat coronavirus (BtCoV/A895/2005) | 0 |
| Bat coronavirus (BtCoV/A897/2005) | 0 |
| Bat coronavirus (BtCoV/A898/2005) | 0 |
| Bat coronavirus (BtCoV/A900/2005) | 0 |
| Bat coronavirus (BtCoV/A905/2005) | 0 |
| Bat coronavirus (BtCoV/A906/2005) | 0 |
| Bat coronavirus (BtCoV/908/2005) | 0 |
| Bat coronavirus (BtCoV/A909/2005) | 0 |
| Bat coronavirus (BtCoV/A910/2005) | 0 |
| Bat coronavirus (BtCoV/A912/2005) | 0 |
| Bat coronavirus (BtCoV/A914/2005) | 0 |
| Bat coronavirus (BtCoV/A957/2005) | 0 |
| Bat coronavirus (BtCoV/A970/2005) | 0 |
| Bat coronavirus (BtCoV/ A1074/2005) | 0 |
| Bat coronavirus (BtCoV/ A1201/2005) | 0 |
| Bat coronavirus (BtCoV/242/2005) | 0 |
| Bat coronavirus (BtCoV/301/2005) | 0 |
| Bat coronavirus (BtCoV/303/2005) | 0 |
| Bat coronavirus (BtCoV/309/2005) | 0 |
| Bat coronavirus (BtCoV/310A /2005) | 0 |
| Bat coronavirus (BtCoV/311A /2005) | 0 |
| Bat coronavirus (BtCoV/355A/2005) | 0 |
| Bat coronavirus (BtCoV/359A/2005) | 0 |
| Bat coronavirus (BtCoV/363A/2005) | 0 |
| Bat coronavirus (BtCoV/364A/2005) | 0 |
| Bat coronavirus (BtCoV/365A/2005) | 0 |
| Bat coronavirus (BtCoV/367A/2005) | 0 |
| Bat coronavirus (BtCoV/427/2005) | 0 |
| Bat coronavirus (BtCoV/A1018/2005) | 0 |
| Bat coronavirus (BtCoV/A1116/2005) | 0 |
| Bat coronavirus (BtCoV/A1196/2005) | 0 |
| Bat coronavirus (BtCoV/A1203/2005) | 0 |
| Bat coronavirus (BtCoV/A1206/2005) | 0 |
| Bat coronavirus (BtCoV/A421/2005) | 0 |
| Bat coronavirus (BtCoV/A429/2005) | 0 |
| Bat coronavirus (BtCoV/A433/2005) | 0 |
| Bat coronavirus (BtCoV/A437/2005) | 0 |
| Bat coronavirus HKU6 | 0 |
| Bat coronavirus HKU7 | 0 |
| SARS coronavirus TJ01 | 0 |
| Bovine coronaviurus KV0501 | 0 |
| Bovine coronaviurus KV0516 | 0 |
| Coronavirus group 2c | 0 |
| Canine coronavirus BGF10 | 0 |
| Chinese bamboo rat coronavirus Guangxi/B305/2005 | 0 |
| Flying squirrel coronavirus Guangxi/E001/2006 | 0 |
| Lesser Indian civet coronavirus Guangxi/D690/2005 | 0 |
| Masked palm civet coronavirus Guangxi/D728/2005 | 0 |
| Siberian weasel coronavirus Guangxi/D1000/2006 | 0 |
| Yellow-bellied weasel coronavirus Guangxi/D726/2005 | 0 |
| Guangxi coronaviridae | 0 |
| Bat SARS coronavirus HKU3 | 0 |
| Human coronavirus HKU1 (isolate N1) | 0 |
| Human coronavirus HKU1 (isolate N2) | 0 |
| Human coronavirus HKU1 (isolate N5) | 0 |
| Coronavirus group 2b | 0 |
| Rocky Mountain Bat Coronavirus 11 | 0 |
| Rocky Mountain Bat Coronavirus 27 | 0 |
| Rocky Mountain Bat Coronavirus 3 | 0 |
| Rocky Mountain Bat Coronavirus 48 | 0 |
| Rocky Mountain Bat Coronavirus 6 | 0 |
| Rocky Mountain Bat Coronavirus 65 | 0 |
| Bat coronavirus DR/2007 | 0 |
| Bat coronavirus M.das/Germany/D2.2/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.3/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.4/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.15/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.5/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.6/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.28/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.10/2007 | 0 |
| Bat coronavirus M.das/Germany/D5.17/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.33/2007 | 0 |
| Bat coronavirus M.das/Germany/D3.38/2007 | 0 |
| Bat coronavirus P.nat/Germany/D5.16/2007 | 0 |
| Bat coronavirus M.bec/Germany/D6.6/2007 | 0 |
| Bat coronavirus M.dau/Germany/D7.3/2007 | 0 |
| Bat coronavirus P.pyg/Germany/D5.70/2007 | 0 |
| Bat coronavirus P.pyg/Germany/D5.71/2007 | 0 |
| Bat coronavirus P.nat/Germany/D5.73/2007 | 0 |
| Bat coronavirus P.pyg/Germany/D5.85/2007 | 0 |
| Bat coronavirus M.dau/Germany/D8.46/2007 | 0 |
| Bat coronavirus M.dau/Germany/D8.45/2007 | 0 |
| Bat coronavirus M.dau/Germany/D8.42/2007 | 0 |
| Bat coronavirus M.dau/Germany/D8.38/2007 | 0 |
| Bat coronavirus M.dau/Germany/D8.32/2007 | 0 |
| Bovine coronavirus UP1/PRT/2005 | 0 |
| Bovine coronavirus UP2/PRT/2005 | 0 |
| Bat coronavirus R.aur/Australia/CoV000/2006 | 0 |
| Bat coronavirus M.mac/Australia/CoV034/2008 | 0 |
| Bat coronavirus M.aus/Australia/CoV088/2007 | 0 |
| Bat coronavirus R.meg/Australia/CoV100/2007 | 0 |
| Bat coronavirus M.aus/Australia/CoV132/2007 | 0 |
| Bat coronavirus M.sch/Australia/CoV146/2007 | 0 |
| Bat coronavirus M.aus/Australia/CoV180/1996 | 0 |
| Tai Forest coronavirus | 0 |
| Bat coronavirus Trinidad/1FY2BA/2007 | 0 |
| Bat coronavirus Trinidad/1CO7BA/2007 | 0 |
| Bulbul coronavirus HKU11 | 0 |
| Bat coronavirus Hipposideros/GhanaBoo/344/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaBoo/348/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/10/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/13/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/19/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/20/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/22/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/24/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/26/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/27/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/31/2008 | 0 |
| Bat coronavirus Hipposideros/GhanaKwam/8/2008 | 0 |
| Infectious bronchitis virus CK/CH/LHLJ/04V | 0 |
| Coronavirus Anas/p71/2005/GBR | 0 |
| Coronavirus red knot/p60/2006/GBR | 0 |
| Coronavirus oystercatcher/p17/2006/GBR | 0 |
| Coronavirus Anas/p42/2005/GBR | 0 |
| Alpaca coronavirus CA08-1/2008 | 0 |
| Bat coronavirus SLO1A0050/2008/SVN | 0 |
| Bat coronavirus SLO1A0066/2008/SVN | 0 |
| Bat coronavirus SLO1A0082/2008/SVN | 0 |
| Harbor seal coronavirus 1 | 0 |
| Kenya bat coronavirus BtKY01 | 0 |
| Kenya bat coronavirus BtKY02 | 0 |
| Kenya bat coronavirus BtKY03 | 0 |
| Kenya bat coronavirus BtKY04 | 0 |
| Kenya bat coronavirus BtKY05 | 0 |
| Kenya bat coronavirus BtKY07 | 0 |
| Kenya bat coronavirus BtKY08 | 0 |
| Kenya bat coronavirus BtKY09 | 0 |
| Kenya bat coronavirus BtKY10 | 0 |
| Kenya bat coronavirus BtKY11 | 0 |
| Kenya bat coronavirus BtKY12 | 0 |
| Kenya bat coronavirus BtKY13 | 0 |
| Kenya bat coronavirus BtKY14 | 0 |
| Kenya bat coronavirus BtKY15 | 0 |
| Kenya bat coronavirus BtKY17 | 0 |
| Kenya bat coronavirus BtKY18 | 0 |
| Kenya bat coronavirus BtKY19 | 0 |
| Kenya bat coronavirus BtKY20 | 0 |
| Kenya bat coronavirus BtKY21 | 0 |
| Kenya bat coronavirus BtKY23 | 0 |
| Kenya bat coronavirus BtKY24 | 0 |
| Kenya bat coronavirus BtKY25 | 0 |
| Kenya bat coronavirus BtKY28 | 0 |
| Kenya bat coronavirus BtKY29 | 0 |
| Kenya bat coronavirus BtKY30 | 0 |
| Kenya bat coronavirus BtKY31 | 0 |
| Kenya bat coronavirus BtKY34 | 0 |
| Kenya bat coronavirus BtKY35 | 0 |
| Kenya bat coronavirus BtKY36 | 0 |
| Kenya bat coronavirus BtKY37 | 0 |
| Kenya bat coronavirus BtKY39 | 0 |
| Kenya bat coronavirus BtKY40 | 0 |
| Kenya bat coronavirus BtKY42 | 0 |
| recombinant SARSr-CoV | 0 |
| Bat coronavirus Philippines/Diliman1552G1/2008 | 0 |
| Bat coronavirus Philippines/Diliman1525G2/2008 | 0 |
| Coronavirus N.noc/VM182/2007/NLD | 0 |
| Coronavirus N.noc/VM176/2007/NLD | 0 |
| Coronavirus N.noc/VM366/2008/NLD | 0 |
| Coronavirus N.noc/VM199/2007/NLD | 0 |
| Coronavirus P.pipi/VM312/2008/NLD | 0 |
| Coronavirus M.das/VM3/2007/NLD | 0 |
| Coronavirus M.das/VM34/2006/NLD | 0 |
| Coronavirus M.das/VM84/2007/NLD | 0 |
| Coronavirus M.das/VM105/2006/NLD | 0 |
| Coronavirus M.das/VM62/2007/NLD | 0 |
| Coronavirus M.das/VM73/2007/NLD | 0 |
| Coronavirus M.dau/VM222/2007/NLD | 0 |
| Coronavirus M.dau/VM303/2008/NLD | 0 |
| Coronavirus M.dau/VM361/2008/NLD | 0 |
| Coronavirus M.das/VM7/2007/NLD | 0 |
| Coronavirus M.das/VM284/2008/NLD | 0 |
| Coronavirus M.das/VM2/2007/NLD | 0 |
| Coronavirus P.pipi/VM314/2008/NLD | 0 |
| Black-headed gull coronavirus CIR-66144 | 0 |
| Black-headed gull coronavirus CIR-66146 | 0 |
| Black-headed gull coronavirus CIR-66152 | 0 |
| Black-headed gull coronavirus CIR-66183 | 0 |
| Black-headed gull coronavirus CIR-66185 | 0 |
| Black-headed gull coronavirus CIR-66187 | 0 |
| Brent goose coronavirus KR-69 | 0 |
| Brent goose coronavirus KR-70 | 0 |
| Brent goose coronavirus KR-88 | 0 |
| Glaucous-winged gull CIR-66002 | 0 |
| Glaucus-gull coronavirus PBA-173 | 0 |
| Pintail coronavirus PBA-10 | 0 |
| Pintail coronavirus PBA-124 | 0 |
| Pintail coronavirus PBA-15 | 0 |
| Pintail coronavirus PBA-16 | 0 |
| Pintail coronavirus PBA-25 | 0 |
| Pintail coronavirus PBA-37 | 0 |
| Rock sandpiper coronavirus CIR-65824 | 0 |
| Rock sandpiper coronavirus CIR-65828 | 0 |
| Rock sandpiper coronavirus CIR-65885 | 0 |
| Rock sandpiper coronavirus CIR-665821 | 0 |
| Snow goose coronavirus WIR-159 | 0 |
| Western sandpiper coronavirus KR-28 | 0 |
| Infectious bronchitis virus 4/91 | 0 |
| Bovine coronavirus cow/WDBR-96/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-729/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-841/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-887/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-923/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-978/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-1005/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-1275/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-9146/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-9215/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-9224/BRA/2003 | 0 |
| Bovine coronavirus cow/WDBR-54/BRA/2003 | 0 |
| Puffinosis coronavirus | 0 |
| Bat coronavirus TM5 | 0 |
| Bat coronavirus BB98-15/BGR/2008 | 0 |
| Bat coronavirus BB98-16/BGR/2008 | 0 |
| Bat coronavirus BB98-18/BGR/2008 | 0 |
| Bat coronavirus BB98-41/BGR/2008 | 0 |
| Bat coronavirus BB98-43/BGR/2008 | 0 |
| Bat coronavirus BM48-12/BGR/2008 | 0 |
| Bat coronavirus BM48-28/BGR/2008 | 0 |
| Bat coronavirus BM48-32/BGR/2008 | 0 |
| Bat coronavirus BM48-34/BGR/2008 | 0 |
| Bat coronavirus BM48-35/BGR/2008 | 0 |
| Bat coronavirus BM48-39/BGR/2008 | 0 |
| Bat coronavirus BM48-48/BGR/2008 | 0 |
| Bat coronavirus BM98-01/BGR/2008 | 0 |
| Bat coronavirus BM98-05/BGR/2008 | 0 |
| Bat coronavirus BM98-07/BGR/2008 | 0 |
| Bat coronavirus BM98-13/BGR/2008 | 0 |
| Bat coronavirus BM98-65/BGR/2008 | 0 |
| Bat coronavirus BNM98-29/BGR/2008 | 0 |
| Bat coronavirus BNM98-30/BGR/2008 | 0 |
| Bat coronavirus BR98-12/BGR/2008 | 0 |
| Bat coronavirus BR98-14/BGR/2008 | 0 |
| Bat coronavirus BR98-18/BGR/2008 | 0 |
| Bat coronavirus BR98-30/BGR/2008 | 0 |
| Bat coronavirus BR98-31/BGR/2008 | 0 |
| Bat coronavirus BR98-37/BGR/2008 | 0 |
| Bat coronavirus BR98-40/BGR/2008 | 0 |
| Bat coronavirus BR98-52/BGR/2008 | 0 |
| Bat coronavirus BR98-53/BGR/2008 | 0 |
| Bat coronavirus BR98-55/BGR/2008 | 0 |
| Bat coronavirus NM98-62/GER/2008 | 0 |
| Bat coronavirus 1B BR98-19/BGR/2008 | 0 |
| Bat coronavirus 2B BR98-19/BGR/2008 | 0 |
| Bat coronavirus Hipposideros/KT/Thailand/2007 | 0 |
| Kenya bat coronavirus BtKY100 | 0 |
| Kenya bat coronavirus BtKY101 | 0 |
| Kenya bat coronavirus BtKY102 | 0 |
| Kenya bat coronavirus BtKY103 | 0 |
| Kenya bat coronavirus BtKY104 | 0 |
| Kenya bat coronavirus BtKY105 | 0 |
| Kenya bat coronavirus BtKY106 | 0 |
| Kenya bat coronavirus BtKY107 | 0 |
| Kenya bat coronavirus BtKY108 | 0 |
| Kenya bat coronavirus BtKY109 | 0 |
| Kenya bat coronavirus BtKY110 | 0 |
| Kenya bat coronavirus BtKY111 | 0 |
| Kenya bat coronavirus BtKY112 | 0 |
| Kenya bat coronavirus BtKY113 | 0 |
| Kenya bat coronavirus BtKY44 | 0 |
| Kenya bat coronavirus BtKY45 | 0 |
| Kenya bat coronavirus BtKY46 | 0 |
| Kenya bat coronavirus BtKY47 | 0 |
| Kenya bat coronavirus BtKY48 | 0 |
| Kenya bat coronavirus BtKY49 | 0 |
| Kenya bat coronavirus BtKY50 | 0 |
| Kenya bat coronavirus BtKY51 | 0 |
| Kenya bat coronavirus BtKY52 | 0 |
| Kenya bat coronavirus BtKY53 | 0 |
| Kenya bat coronavirus BtKY54 | 0 |
| Kenya bat coronavirus BtKY55 | 0 |
| Kenya bat coronavirus BtKY56 | 0 |
| Kenya bat coronavirus BtKY57 | 0 |
| Kenya bat coronavirus BtKY58 | 0 |
| Kenya bat coronavirus BtKY59 | 0 |
| Kenya bat coronavirus BtKY60 | 0 |
| Kenya bat coronavirus BtKY61 | 0 |
| Kenya bat coronavirus BtKY62 | 0 |
| Kenya bat coronavirus BtKY63 | 0 |
| Kenya bat coronavirus BtKY64 | 0 |
| Kenya bat coronavirus BtKY65 | 0 |
| Kenya bat coronavirus BtKY66 | 0 |
| Kenya bat coronavirus BtKY67 | 0 |
| Kenya bat coronavirus BtKY68 | 0 |
| Kenya bat coronavirus BtKY69 | 0 |
| Kenya bat coronavirus BtKY70 | 0 |
| Kenya bat coronavirus BtKY71 | 0 |
| Kenya bat coronavirus BtKY72 | 0 |
| Kenya bat coronavirus BtKY73 | 0 |
| Kenya bat coronavirus BtKY74 | 0 |
| Kenya bat coronavirus BtKY75 | 0 |
| Kenya bat coronavirus BtKY76 | 0 |
| Kenya bat coronavirus BtKY77 | 0 |
| Kenya bat coronavirus BtKY78 | 0 |
| Kenya bat coronavirus BtKY79 | 0 |
| Kenya bat coronavirus BtKY80 | 0 |
| Kenya bat coronavirus BtKY81 | 0 |
| Kenya bat coronavirus BtKY82 | 0 |
| Kenya bat coronavirus BtKY83 | 0 |
| Kenya bat coronavirus BtKY84 | 0 |
| Kenya bat coronavirus BtKY85 | 0 |
| Kenya bat coronavirus BtKY86 | 0 |
| Kenya bat coronavirus BtKY87 | 0 |
| Kenya bat coronavirus BtKY88 | 0 |
| Kenya bat coronavirus BtKY89 | 0 |
| Kenya bat coronavirus BtKY90 | 0 |
| Kenya bat coronavirus BtKY91 | 0 |
| Kenya bat coronavirus BtKY92 | 0 |
| Kenya bat coronavirus BtKY93 | 0 |
| Kenya bat coronavirus BtKY94 | 0 |
| Kenya bat coronavirus BtKY95 | 0 |
| Kenya bat coronavirus BtKY96 | 0 |
| Kenya bat coronavirus BtKY97 | 0 |
| Kenya bat coronavirus BtKY98 | 0 |
| Kenya bat coronavirus BtKY99 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C1148/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C837/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P3-C450/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-replicase/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C676/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C454/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-239577/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C414//IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C412/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C368/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C362/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C348/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P2-C344/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C328/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-293985/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-5088/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-66604/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C265/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C264/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P2-21252/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C149/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-C146/IT/USA/2009 | 0 |
| Zaria bat coronavirus | 0 |
| Bat coronavirus N78-10/Germany/2008 | 0 |
| Bat coronavirus M.ful/Japan/01/2009 | 0 |
| Bat coronavirus M.ful/Japan/02/2009 | 0 |
| Bat coronavirus M.ful/Japan/01/2010 | 0 |
| Bat coronavirus M.ful/Japan/02/2010 | 0 |
| Bat coronavirus M.ful/Japan/03/2010 | 0 |
| Rm-Bat-CoV 453/2007/EF | 1 |
| Feline coronavirus UU47 | 1 |
| Feline coronavirus UU54 | 1 |
| Bat coronavirus M.ful/Japan/03/2009 | 1 |
| Bat coronavirus M.ful/Japan/04/2010 | 1 |
| Ferret coronavirus 511c | 1 |
| Ferret coronavirus 4E98 | 1 |
| Avian infectious bronchitis virus (strain M41) | 1 |
| Murine hepatitis virus strain JHM | 1 |
| Murine hepatitis virus strain S/3239-17 | 1 |
| Alpaca respiratory coronavirus | 1 |
| Murine hepatitis virus strain ML-11 | 1 |
| Human betacoronavirus 2c EMC/2012 | 1 |
| Betacoronavirus BtCoV/KW2E-F93/Nyc_spec/GHA/2010 | 1 |
| Bat coronavirus Rp/Shaanxi2011 | 1 |
| Bat coronavirus Cp/Yunnan2011 | 1 |
| Bat coronavirus BtCoV/8-691/Pip_nat/ROU/2009 | 1 |
| Bat coronavirus BtCoV/8-724/Pip_pyg/ROU/2009 | 1 |
| Bat coronavirus BtCoV/UKR-G17/Pip_nat/UKR/2011 | 1 |
| Human betacoronavirus 2c England-Qatar/2012 | 1 |
| shorebird coronavirus | 1 |
| Coronavirus Neoromicia/PML-PHE1/RSA/2011 | 1 |
| Bat SARS-like coronavirus Rs3262-1 | 1 |
| Bat SARS-like coronavirus Rs3262-2 | 1 |
| Bat SARS-like coronavirus Rs3267-1 | 1 |
| Bat SARS-like coronavirus Rs3267-2 | 1 |
| Bat SARS-like coronavirus Rs3367 | 1 |
| Bat SARS-like coronavirus Rs3369 | 1 |
| Bat SARS-like coronavirus Rs4075 | 1 |
| Bat SARS-like coronavirus Rs4079 | 1 |
| Bat SARS-like coronavirus Rs4080 | 1 |
| Bat SARS-like coronavirus Rs4081 | 1 |
| Bat SARS-like coronavirus Rs4084 | 1 |
| Bat SARS-like coronavirus Rs4085 | 1 |
| Bat SARS-like coronavirus Rs4087-1 | 1 |
| Bat SARS-like coronavirus Rs4087-2 | 1 |
| Bat SARS-like coronavirus Rs4090 | 1 |
| Bat SARS-like coronavirus Rs4092 | 1 |
| Bat SARS-like coronavirus Rs4096 | 1 |
| Bat SARS-like coronavirus Rs4097 | 1 |
| Bat SARS-like coronavirus Rs4105 | 1 |
| Bat SARS-like coronavirus Rs4108 | 1 |
| Bat SARS-like coronavirus Rs4110 | 1 |
| Bat SARS-like coronavirus RsSHC014 | 1 |
| Human coronavirus Feline-like Hu142 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois121/2014 | 1 |
| Porcine deltacoronavirus 8734/USA-IA/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois133/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois134/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois136/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Ohio137/2014 | 1 |
| Mystacina coronavirus New Zealand/2013 | 1 |
| BtVs-BetaCoV/SC2013 | 1 |
| BtMf-AlphaCoV/AH2011 | 1 |
| BtMf-AlphaCoV/FJ2012 | 1 |
| BtMf-AlphaCoV/GD2012 | 1 |
| BtMf-AlphaCoV/GD2012-a | 1 |
| BtMf-AlphaCoV/GD2012-b | 1 |
| BtMf-AlphaCoV/HeN2013 | 1 |
| BtMf-AlphaCoV/HuB2013 | 1 |
| BtMf-AlphaCoV/HuB2013-a | 1 |
| BtMf-AlphaCoV/JX2012 | 1 |
| BtMs-AlphaCoV/GS2013 | 1 |
| BtPa-BetaCoV/GD2013 | 1 |
| BtRf-BetaCoV/HeB2013 | 1 |
| BtRf-BetaCoV/HeN2013 | 1 |
| BtRf-BetaCoV/HuB2013 | 1 |
| BtRf-BetaCoV/JL2012 | 1 |
| BtRf-BetaCoV/SX2013 | 1 |
| BtRs-BetaCoV/GX2013 | 1 |
| BtRs-BetaCoV/HuB2013 | 1 |
| BtRs-BetaCoV/YN2013 | 1 |
| BtTp-BetaCoV/GX2012 | 1 |
| Longquan Aa mouse coronavirus | 1 |
| Porcine epidemic diarrhea virus L00721/GER/2014 | 1 |
| Swine deltacoronavirus OhioCVM1/2014 | 1 |
| Porcine deltacoronavirus KNU14-04 | 1 |
| Avian infectious bronchitis virus (strain Beaudette US) | 1 |
| Bat SARS-like coronavirus YNLF_31C | 1 |
| Bat SARS-like coronavirus YNLF_34C | 1 |
| SARS-like coronavirus BatCoV/BB9904/BGR/2008 | 1 |
| SARS-like coronavirus WIV16 | 1 |
| European turkey coronavirus 080385d | 1 |
| Bat coroanvirus MsBtCoV/4001-1 | 1 |
| Bat coronavirus MfulBtCoV/3709 | 1 |
| Bat coronavirus MfulBtCoV/3736-1 | 1 |
| Bat coronavirus MfulBtCoV/3759-1 | 1 |
| Bat coronavirus MsBtCoV/3710 | 1 |
| Bat coronavirus MsBtCoV/4056 | 1 |
| Bat coronavirus MsBtCoV/4068 | 1 |
| Bat coronavirus RsBtCoV/3716 | 1 |
| Bat coronavirus/4539/2013/Cynomops planirostris/Brazil | 1 |
| Bat coronavirus/4705/2013/Cynomops abrasus/Brazil | 1 |
| Scotophilus kuhlii coronavirus | 1 |
| Hedgehog coronavirus 1 | 1 |
| Myotis lucifugus coronavirus | 1 |
| Equine coronavirus NC99 | 1 |
| Porcine enteric alphacoronavirus GDS04 | 1 |
| Swine enteric alphacoronavirus | 1 |
| Falcon coronavirus UAE-HKU27 | 1 |
| Houbara coronavirus UAE-HKU28 | 1 |
| Pigeon coronavirus UAE-HKU29 | 1 |
| Guangdong chinese water skink coronavirus | 1 |
| Water deer coronavirus | 1 |
| Alphacoronavirus Mink/China/1/2016 | 1 |
| Quail deltacoronavirus | 1 |
| SARS coronavirus Urbani | 1 |
| SARS coronavirus CUHK-W1 | 1 |
| SARS coronavirus CUHK-Su10 | 1 |
| SARS coronavirus TW1 | 1 |
| SARS coronavirus ZJ01 | 1 |
| Avian infectious bronchitis virus (strain H120) | 1 |
| SARS coronavirus GD01 | 1 |
| SARS coronavirus HSR 1 | 1 |
| SARS coronavirus Shanhgai LY | 1 |
| SARS coronavirus Taiwan TC1 | 1 |
| SARS coronavirus Taiwan TC2 | 1 |
| SARS coronavirus CUHK-AG01 | 1 |
| SARS coronavirus CUHK-AG02 | 1 |
| SARS coronavirus CUHK-AG03 | 1 |
| SARS coronavirus Taiwan TC3 | 1 |
| SARS coronavirus TWH | 1 |
| SARS coronavirus TWJ | 1 |
| SARS coronavirus TWK | 1 |
| SARS coronavirus TWS | 1 |
| SARS coronavirus TWY | 1 |
| Feline alphacoronavirus 1 | 1 |
| SARS coronavirus FRA | 1 |
| SARS coronavirus AS | 1 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206645-41/2011 | 1 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206679-3/2010 | 1 |
| Alphacoronavirus UKMa1 | 1 |
| Alphacoronavirus UKRn3 | 1 |
| SARS coronavirus PUMC01 | 1 |
| SARS coronavirus PUMC02 | 1 |
| SARS coronavirus PUMC03 | 1 |
| SARS coronavirus GZ02 | 1 |
| SARS coronavirus ShanghaiQXC1 | 1 |
| SARS coronavirus ShanghaiQXC2 | 1 |
| Tylonycteris bat coronavirus HKU33 | 1 |
| SARS coronavirus TW10 | 1 |
| SARS coronavirus TW11 | 1 |
| SARS coronavirus TW2 | 1 |
| SARS coronavirus TW3 | 1 |
| SARS coronavirus TW4 | 1 |
| SARS coronavirus TW5 | 1 |
| SARS coronavirus TW6 | 1 |
| SARS coronavirus TW7 | 1 |
| SARS coronavirus TW8 | 1 |
| SARS coronavirus TW9 | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018A | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018B | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018C | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018D | 1 |
| Coronavirus BtRs-AlphaCoV/YN2018 | 1 |
| Coronavirus BtRl-BetaCoV/SC2018 | 1 |
| Coronavirus BtRs-BetaCoV/YN2018A | 1 |
| Coronavirus BtRs-BetaCoV/YN2018B | 1 |
| Coronavirus BtRs-BetaCoV/YN2018C | 1 |
| Coronavirus BtRs-BetaCoV/YN2018D | 1 |
| Coronavirus BtRt-BetaCoV/GX2018 | 1 |
| SARS coronavirus CUHK-L2 | 1 |
| SARS coronavirus NS-1 | 1 |
| SARS coronavirus GD03T0013 | 1 |
| SARS coronavirus TW-HP1 | 1 |
| SARS coronavirus TW-HP2 | 1 |
| SARS coronavirus TW-HP3 | 1 |
| SARS coronavirus TW-HP4 | 1 |
| SARS coronavirus TW-JC2 | 1 |
| SARS coronavirus TW-KC1 | 1 |
| SARS coronavirus TW-KC3 | 1 |
| SARS coronavirus TW-GD1 | 1 |
| SARS coronavirus TW-GD2 | 1 |
| SARS coronavirus TW-GD3 | 1 |
| SARS coronavirus TW-GD4 | 1 |
| SARS coronavirus TW-GD5 | 1 |
| SARS coronavirus TW-YM1 | 1 |
| SARS coronavirus TW-YM2 | 1 |
| SARS coronavirus TW-YM3 | 1 |
| SARS coronavirus TW-YM4 | 1 |
| SARS coronavirus TW-PH1 | 1 |
| SARS coronavirus TW-PH2 | 1 |
| SARS coronavirus cw049 | 1 |
| SARS coronavirus cw037 | 1 |
| Rousettus aegyptiacus bat coronavirus 229E-related | 1 |
| Miniopterus pusillus bat coronavirus HKU8-related | 1 |
| Miniopterus schreibersii bat coronavirus 1-related | 1 |
| Tylonycteris pachypus bat coronavirus HKU4-related | 1 |
| Pipistrellus abramus bat coronavirus HKU5-related | 1 |
| Scotophilus kuhlii bat coronavirus 512-related | 1 |
| Hipposideros pomona bat coronavirus HKU10-related | 1 |
| Hipposideros pomona bat coronavirus CHB25 | 1 |
| Human group 1 coronavirus associated with pneumonia | 1 |
| Bat coronavirus RaTG13 | 1 |
| SARS coronavirus LLJ-2004 | 1 |
| Avian infectious bronchitis virus partridge/GD/S14/2003 | 1 |
| SARS coronavirus TJF | 1 |
| SARS coronavirus HHS-2004 | 1 |
| Civet SARS CoV 007/2004 | 1 |
| SARS coronavirus civet010 | 1 |
| SARS coronavirus civet014 | 1 |
| SARS coronavirus civet019 | 1 |
| SARS coronavirus civet020 | 1 |
| SARS coronavirus GD322 | 1 |
| SARS Coronavirus CDC#200301157 | 1 |
| SARS coronavirus PC4-127 | 1 |
| SARS coronavirus PC4-205 | 1 |
| SARS coronavirus GZ0403 | 1 |
| SARS coronavirus PC4-115 | 1 |
| SARS coronavirus PC4-137 | 1 |
| SARS coronavirus PC4-145 | 1 |
| SARS coronavirus PC4-199 | 1 |
| SARS coronavirus PC4-241 | 1 |
| Canine coronavirus 1-71 | 1 |
| SARS coronavirus A001 | 1 |
| SARS coronavirus A013 | 1 |
| SARS coronavirus A021 | 1 |
| SARS coronavirus A030 | 1 |
| SARS coronavirus A031 | 1 |
| SARS coronavirus B012 | 1 |
| SARS coronavirus B024 | 1 |
| SARS coronavirus B029 | 1 |
| SARS coronavirus B033 | 1 |
| SARS coronavirus B040 | 1 |
| SARS coronavirus C013 | 1 |
| SARS coronavirus C014 | 1 |
| SARS coronavirus C017 | 1 |
| SARS coronavirus C018 | 1 |
| SARS coronavirus C019 | 1 |
| SARS coronavirus C025 | 1 |
| SARS coronavirus C028 | 1 |
| SARS coronavirus C029 | 1 |
| SARS coronavirus WH20 | 1 |
| SARS coronavirus BJ162 | 1 |
| SARS coronavirus BJ202 | 1 |
| Canine coronavirus isolate NJ17 | 1 |
| Bat SARS coronavirus HKU3-1 | 1 |
| Bat SARS coronavirus HKU3-2 | 1 |
| Bat SARS coronavirus HKU3-3 | 1 |
| SARS coronavirus ZJ0301 | 1 |
| Bat SARS CoV Rm1/2004 | 1 |
| Bat SARS CoV Rf1/2004 | 1 |
| Bat SARS CoV Rp3/2004 | 1 |
| Spotted hyena coronavirus | 1 |
| Ferret enteric coronavirus MSU1 | 1 |
| SARS coronavirus CS21 | 1 |
| SARS coronavirus CS24 | 1 |
| SARS coronavirus ES191 | 1 |
| SARS coronavirus ES260 | 1 |
| SARS coronavirus WF188 | 1 |
| Bat coronavirus Fujian/773/2005 | 1 |
| Bat coronavirus Anhui/911/2005 | 1 |
| Bat coronavirus Shandong/977/2006 | 1 |
| Bat CoV 273/2005 | 1 |
| Bat CoV 279/2005 | 1 |
| Bat coronavirus (BtCoV/133/2005) | 1 |
| Bat coronavirus (BtCoV/A434/2005) | 1 |
| Bat coronavirus A515/2005 | 1 |
| Bat coronavirus A527/2005 | 1 |
| Bat coronavirus A701/2005 | 1 |
| SARS coronavirus Frankfurt1-v01 | 1 |
| Bat coronavirus 1A | 1 |
| Bat coronavirus 1B | 1 |
| Bovine coronavirus DB2 | 1 |
| TGEV Miller M6 | 1 |
| TGEV Miller M60 | 1 |
| TGEV Purdue P115 | 1 |
| TGEV virulent Purdue | 1 |
| PRCV ISU-1 | 1 |
| Bovine coronavirus isolate Alpaca | 1 |
| Infectious bronchitis virus PRT/L-898/2004 | 1 |
| Infectious bronchitis virus AZE/L-1582/2004 | 1 |
| Infectious bronchitis virus RUS/L-1777/2005 | 1 |
| Infectious bronchitis virus YEM/L-2865/2005 | 1 |
| Sambar deer coronavirus US/OH-WD388/1994 | 1 |
| White-tailed deer coronavirus US/OH-WD470/1994 | 1 |
| Waterbuck coronavirus US/OH-WD358/1994 | 1 |
| Waterbuck coronavirus US/OH-WD358-TC/1994 | 1 |
| Sable antelope coronavirus US/OH1/2003 | 1 |
| Giraffe coronavirus US/OH3/2003 | 1 |
| Calf-giraffe coronavirus US/OH3/2006 | 1 |
| Giraffe coronavirus US/OH3-TC/2006 | 1 |
| Bovine coronavirus R-AH65 | 1 |
| Bovine coronavirus R-AH65-TC | 1 |
| Bovine coronavirus E-DB2-TC | 1 |
| Bovine coronavirus E-AH65 | 1 |
| Bovine coronavirus E-AH65-TC | 1 |
| Bovine coronavirus R-AH187 | 1 |
| Bovine coronavirus E-AH187 | 1 |
| Bat coronavirus HKU4-1 | 1 |
| Bat coronavirus HKU4-2 | 1 |
| Bat coronavirus HKU4-3 | 1 |
| Bat coronavirus HKU4-4 | 1 |
| Bat coronavirus HKU5-1 | 1 |
| Bat coronavirus HKU5-2 | 1 |
| Bat coronavirus HKU5-3 | 1 |
| Bat coronavirus HKU5-5 | 1 |
| Bat coronavirus HKU9-1 | 1 |
| Bat coronavirus HKU9-2 | 1 |
| Bat coronavirus HKU9-3 | 1 |
| Bat coronavirus HKU9-4 | 1 |
| Murine coronavirus repJHM/RA59 | 1 |
| Murine coronavirus repA59/RJHM | 1 |
| Murine coronavirus SA59/RJHM | 1 |
| Quail coronavirus Italy/Elvia/2005 | 1 |
| Raccoon dog coronavirus GZ43/2003 | 1 |
| Chinese ferret badger coronavirus DM95/2003 | 1 |
| Asian leopard cat coronavirus Guangxi/F230/2006 | 1 |
| Chinese ferret badger coronavirus Guangxi/F247/2006 | 1 |
| Chinese ferret badger coronavirus Guangxi/F250/2006 | 1 |
| Feline coronavirus UU3 | 1 |
| Feline coronavirus UU4 | 1 |
| Feline coronavirus UU5 | 1 |
| Feline coronavirus UU7 | 1 |
| Bovine coronavirus E-AH187-TC | 1 |
| Bovine coronavirus Bubalus/Italy/179/07-11 | 1 |
| Waterbuck coronavirus US/OH-WD358-GnC/1994 | 1 |
| Feline coronavirus RM | 1 |
| Feline coronavirus UU2 | 1 |
| Murine coronavirus MHV-3 | 1 |
| Bovine respiratory coronavirus bovine/US/OH-440-TC/1996 | 1 |
| Murine coronavirus MHV-1 | 1 |
| Murine coronavirus RA59/SJHM | 1 |
| Bovine respiratory coronavirus AH187 | 1 |
| SARS coronavirus BJ182-12 | 1 |
| SARS coronavirus BJ182-4 | 1 |
| SARS coronavirus BJ182-8 | 1 |
| SARS coronavirus BJ182a | 1 |
| SARS coronavirus BJ182b | 1 |
| Bulbul coronavirus HKU11-796 | 1 |
| Murine coronavirus MHV-JHM.IA | 1 |
| Murine coronavirus RA59/R13 | 1 |
| Murine coronavirus RJHM/A | 1 |
| Murine coronavirus inf-MHV-A59 | 1 |
| Feline coronavirus UU10 | 1 |
| Feline coronavirus UU11 | 1 |
| Feline coronavirus UU15 | 1 |
| Feline coronavirus UU16 | 1 |
| Feline coronavirus UU8 | 1 |
| Feline coronavirus UU9 | 1 |
| Human enteric coronavirus strain 4408 | 1 |
| SARS coronavirus P2 | 1 |
| Infectious bronchitis virus ITA/90254/2005 | 1 |
| Infectious bronchitis virus NGA/A116E7/2006 | 1 |
| Bat SARS Cov Rs806/2006 | 1 |
| Bovine coronavirus Bubalus/339/ITA/2007 | 1 |
| Bovine coronavirus Bubalus/82/ITA/2008 | 1 |
| Bovine coronavirus Bubalus/153/ITA/2008 | 1 |
| Bovine coronavirus Bubalus/155/ITA/2008 | 1 |
| Feline coronavirus UU22 | 1 |
| Feline coronavirus UU23 | 1 |
| SARS coronavirus Rs_672/2006 | 1 |
| Ferret enteric coronavirus 1202 | 1 |
| Ferret systemic coronavirus MSU-S | 1 |
| Ferret systemic coronavirus WADL | 1 |
| Bat SARS coronavirus HKU3-10 | 1 |
| Bat SARS coronavirus HKU3-11 | 1 |
| Bat SARS coronavirus HKU3-12 | 1 |
| Bat SARS coronavirus HKU3-13 | 1 |
| Bat SARS coronavirus HKU3-4 | 1 |
| Bat SARS coronavirus HKU3-5 | 1 |
| Bat SARS coronavirus HKU3-6 | 1 |
| Bat SARS coronavirus HKU3-7 | 1 |
| Bat SARS coronavirus HKU3-8 | 1 |
| Bat SARS coronavirus HKU3-9 | 1 |
| Murine hepatitis virus strain 2 | 1 |
| Mink coronavirus strain WD1133 | 1 |
| Feline coronavirus UU17 | 1 |
| Feline coronavirus UU18 | 1 |
| Feline coronavirus UU21 | 1 |
| Feline coronavirus UU24 | 1 |
| Feline coronavirus UU31 | 1 |
| Feline coronavirus UU34 | 1 |
| Bat coronavirus HKU9-10-1 | 1 |
| Bat coronavirus HKU9-10-2 | 1 |
| Bat coronavirus HKU9-5-1 | 1 |
| Bat coronavirus HKU9-5-2 | 1 |
| Feline coronavirus UU19 | 1 |
| Feline coronavirus UU20 | 1 |
| Feline coronavirus UU30 | 1 |
| Feline coronavirus UU40 | 1 |
| Rat sialodacryoadenitis coronavirus | 1 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P3-C766/IT/USA/2009 | 1 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-287740/IT/USA/2009 | 1 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-265225/IT/USA/2009 | 1 |
| Cardioderma bat coronavirus/Kenya/KY43/2006 | 1 |
| Chaerephon bat coronavirus/Kenya/KY41/2006 | 1 |
| Eidolon bat coronavirus/Kenya/KY24/2006 | 1 |
| Rousettus bat coronavirus/Kenya/KY06/2006 | 1 |
| Miniopterus bat coronavirus/Kenya/KY27/2006 | 1 |
| Miniopterus bat coronavirus/Kenya/KY33/2006 | 1 |
| Chaerephon bat coronavirus/Kenya/KY22/2006 | 1 |
| Murine hepatitis virus strain A59 | 2 |
| Common moorhen coronavirus HKU21 | 2 |
| Magpie-robin coronavirus HKU18 | 2 |
| Night heron coronavirus HKU19 | 2 |
| Sparrow coronavirus HKU17 | 2 |
| White-eye coronavirus HKU16 | 2 |
| Wigeon coronavirus HKU20 | 2 |
| Guinea fowl coronavirus GfCoV/FR/2011 | 2 |
| Betacoronavirus England 1 | 2 |
| Human betacoronavirus 2c Jordan-N3/2012 | 2 |
| Bat coronavirus CDPHE15/USA/2006 | 2 |
| Bat SARS-like coronavirus WIV1 | 2 |
| BtMr-AlphaCoV/SAX2011 | 2 |
| BtNv-AlphaCoV/SC2013 | 2 |
| BtRf-AlphaCoV/HuB2013 | 2 |
| BtRf-AlphaCoV/YN2012 | 2 |
| Lucheng Rn rat coronavirus | 2 |
| Bat Hp-betacoronavirus/Zhejiang2013 | 2 |
| Human enteric coronavirus 4408 | 2 |
| Camel coronavirus HKU23 | 2 |
| Rousettus bat coronavirus | 2 |
| Coronavirus AcCoV-JC34 | 2 |
| Coronavirus HKU15 | 2 |
| Hypsugo bat coronavirus HKU25 | 2 |
| Shrew coronavirus | 2 |
| Quail coronavirus UAE-HKU30 | 2 |
| SARS coronavirus BJ01 | 2 |
| SARS coronavirus Frankfurt 1 | 2 |
| Bat alphacoronavirus | 2 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015 | 2 |
| Canada goose coronavirus | 2 |
| Rhinolophus bat coronavirus HKU32 | 2 |
| SARS coronavirus sf098 | 2 |
| Erinaceus hedgehog coronavirus HKU31 | 2 |
| SARS coronavirus B039 | 2 |
| SARS coronavirus A022 | 2 |
| SARS coronavirus ZJ02 | 2 |
| Sambar deer coronavirus US/OH-WD388-TC/1994 | 2 |
| Rat coronavirus Parker | 2 |
| Bulbul coronavirus HKU11-934 | 2 |
| Munia coronavirus HKU13-3514 | 2 |
| Thrush coronavirus HKU12-600 | 2 |
| Scotophilus bat coronavirus 512 | 2 |
| Miniopterus bat coronavirus 1 | 2 |
| Miniopterus bat coronavirus HKU8 | 2 |
| Rousettus bat coronavirus HKU9 | 2 |
| Beluga whale coronavirus SW1 | 2 |
| Ferret enteric coronavirus | 2 |
| Ferret systemic coronavirus | 2 |
| Mink coronavirus strain WD1127 | 2 |
| Bat coronavirus BM48-31/BGR/2008 | 2 |
| Rousettus bat coronavirus HKU10 | 3 |
| Betacoronavirus Erinaceus/VMC/DEU/2012 | 3 |
| Bottlenose dolphin coronavirus HKU22 | 3 |
| Longquan Rl rat coronavirus | 3 |
| Rabbit coronavirus | 3 |
| Porcine enteric alphacoronavirus | 3 |
| Porcine deltacoronavirus Sichuan | 3 |
| Betacoronavirus HKU24 | 4 |
| NL63-related bat coronavirus | 4 |
| Sparrow deltacoronavirus | 4 |
| Bottlenose dolphin coronavirus | 4 |
| Duck coronavirus | 4 |
| Rabbit coronavirus HKU14 | 5 |
| SARS coronavirus HKU-39849 | 5 |
| Pangolin coronavirus | 5 |
| Hipposideros bat coronavirus HKU10 | 6 |
| Camel alphacoronavirus Camel229E | 6 |
| Rat coronavirus | 6 |
| Rhinolophus bat coronavirus HKU2 | 6 |
| Murine coronavirus | 6 |
| SARS coronavirus BJ302 | 8 |
| Pigeon coronavirus | 8 |
| Wencheng Sm shrew coronavirus | 10 |
| Guinea fowl coronavirus | 10 |
| Swine enteric coronavirus | 11 |
| Pheasant coronavirus | 11 |
| Alpaca coronavirus | 12 |
| Rodent coronavirus | 12 |
| Porcine coronavirus HKU15 | 13 |
| Dromedary camel coronavirus HKU23 | 13 |
| Bat SARS-like coronavirus | 14 |
| Equine coronavirus | 16 |
| 229E-related bat coronavirus | 16 |
| Canine respiratory coronavirus | 17 |
| Tylonycteris bat coronavirus HKU4 | 17 |
| Porcine hemagglutinating encephalomyelitis virus | 18 |
| Pipistrellus bat coronavirus HKU5 | 19 |
| Swine acute diarrhea syndrome related coronavirus | 23 |
| SARS coronavirus MA15 | 26 |
| SARS coronavirus MA15 ExoN1 | 26 |
| Camel alphacoronavirus | 27 |
| Alphacoronavirus 1 | 30 |
| Murine hepatitis virus | 31 |
| SARS coronavirus wtic-MB | 31 |
| Feline infectious peritonitis virus | 32 |
| SARS coronavirus ExoN1 | 33 |
| Ferret coronavirus | 35 |
| Bat coronavirus | 43 |
| Swine acute diarrhea syndrome coronavirus | 51 |
| Yak coronavirus | 54 |
| Betacoronavirus 1 | 60 |
| Turkey coronavirus | 66 |
| Severe acute respiratory syndrome-related coronavirus | 69 |
| Porcine respiratory coronavirus | 71 |
| Transmissible gastroenteritis virus | 86 |
| Human coronavirus HKU1 | 150 |
| Human coronavirus 229E | 172 |
| Porcine deltacoronavirus | 183 |
| Canine coronavirus | 361 |
| Human coronavirus NL63 | 393 |
| Bovine coronavirus | 660 |
| Avian coronavirus | 679 |
| Human coronavirus OC43 | 739 |
| Feline coronavirus | 753 |
| Severe acute respiratory syndrome coronavirus 2 | 844 |
| Middle East respiratory syndrome-related coronavirus | 991 |
| Porcine epidemic diarrhea virus | 3511 |
| Infectious bronchitis virus | 5952 |
SARS-CoV-2 sequences
- 844 spike protein nucleotide sequences identified by programmatic extraction from GenBank
- However, manual extraction from GenBank (download from SARS-CoV-2 landing page at 2020-03-27 18:15:04 GMT) find additional sequences not contained in these searches because metadata incorrectly labels them under taxid 694009 for SARS-CoV (the parent species).
- 95 sequences identified from manual extraction from GenBank (not as many as above, even with additional sequences, because again, not fully annotated, so can’t extract from searches)
- 2239 sequences identified from manual extraction from GISAID (all complete genomes, though proteins are not annotated..)
Sequence data quality
- Total sequence accessions: 16987, most of which are only partial sequences for spike (NB this distinction assigned using regexp searches in title, as most accessions are missing the “completeness” field and some appear incorrect)
| Var1 | Freq |
|---|---|
| complete_spike | 0.1479955 |
| partial_spike | 0.6415494 |
| whole_genome | 0.2104551 |
While most sequences are only partial, most coronaviruses with at least 1 sequence actually have at least 1 complete spike sequence (420 of 511).
- Trying to determine which protein coding sequences correspond to the spike proteins:
0.15% of coding sequences do not have a protein label annotation in metadata and 32.32% do not have a gene label annotation - using regular expressions based on proteins to determine whether each coding sequence is spike (may be entire S, or just S1 subunit, S2 subunit) or other:
| complete_spike | partial_spike | whole_genome | |
|---|---|---|---|
| other | 1384 | 440 | 30574 |
| S | 2415 | 5462 | 3557 |
| S1 | 15 | 5244 | 0 |
| S2 | 11 | 47 | 0 |
Excluding partial sequences, summaries of counts of different complete spike protein sequence types per coronavirus (taxid):
| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 10 | 12 | 13 | 14 | 16 | 17 | 19 | 21 | 26 | 27 | 28 | 31 | 33 | 42 | 43 | 44 | 46 | 47 | 53 | 87 | 174 | 213 | 282 | 510 | 709 | 831 | 1888 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8 | 312 | 49 | 7 | 5 | 5 | 4 | 1 | 2 | 2 | 1 | 3 | 2 | 1 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
So 5972 individual spike protein sequences across 420 viruses.
NB further complete coding sequences are available that give subunits separately - for S1, 1 virus (Infectious bronchitis virus) and for S2, 2 virus (Infectious bronchitis virus, Porcine epidemic diarrhea virus). Not considering these for now.
Completeness of misc sequence metadata
Of 5972 spike protein sequences… (%s)
| meta_length | 100.0 |
| meta_strain | 41.8 |
| meta_host | 87.2 |
| meta_country | 94.6 |
| meta_isolation_source | 42.3 |
| meta_isolate | 59.7 |
| meta_collection_date | 87.6 |
| meta_note | 12.2 |
| meta_gb_acronym | 64.6 |
| meta_lab_host | 3.0 |
| meta_old_name | 14.5 |
| meta_collected_by | 5.7 |
| meta_lat_lon | 0.7 |
| meta_segment | 0.1 |
| meta_altitude | 0.0 |
| meta_clone | 0.9 |
| meta_metagenome_source | 0.0 |
| meta_identified_by | 0.9 |
| meta_subgroup | 1.0 |
| meta_genotype | 4.5 |
| meta_acronym | 0.5 |
| meta_biotype | 0.1 |
| meta_group | 0.7 |
| meta_subtype | 0.1 |
| meta_serotype | 0.8 |
| meta_cell_line | 0.0 |
| meta_map | 0.0 |
| meta_type | 0.4 |
| meta_clone_lib | 0.0 |
| meta_culture_collection | 0.0 |
| meta_cell_type | 0.1 |
| meta_sub_clone | 0.0 |
| meta_pop_variant | 0.0 |
| meta_chromosome | 0.0 |
| meta_sub_species | 0.0 |
| meta_tissue_type | 0.0 |
| meta_synonym | 0.0 |
| meta_dev_stage | 0.0 |
| meta_sub_strain | 0.0 |
Of 3539 whole genome sequences… (%s)
| meta_length | 100.0 |
| meta_strain | 46.9 |
| meta_host | 87.2 |
| meta_country | 95.2 |
| meta_isolation_source | 41.8 |
| meta_isolate | 55.8 |
| meta_collection_date | 91.0 |
| meta_note | 17.6 |
| meta_gb_acronym | 63.4 |
| meta_lab_host | 3.7 |
| meta_old_name | 17.8 |
| meta_collected_by | 4.9 |
| meta_lat_lon | 0.7 |
| meta_segment | 0.0 |
| meta_altitude | 0.0 |
| meta_clone | 0.4 |
| meta_metagenome_source | 0.0 |
| meta_identified_by | 1.1 |
| meta_subgroup | 1.8 |
| meta_genotype | 5.5 |
| meta_acronym | 0.3 |
| meta_biotype | 0.0 |
| meta_group | 1.0 |
| meta_subtype | 0.0 |
| meta_serotype | 1.1 |
| meta_cell_line | 0.0 |
| meta_map | 0.0 |
| meta_type | 0.5 |
| meta_clone_lib | 0.0 |
| meta_culture_collection | 0.1 |
| meta_cell_type | 0.0 |
| meta_sub_clone | 0.0 |
| meta_pop_variant | 0.0 |
| meta_chromosome | 0.0 |
| meta_sub_species | 0.0 |
| meta_tissue_type | 0.0 |
| meta_synonym | 0.0 |
| meta_dev_stage | 0.0 |
| meta_sub_strain | 0.1 |
All host metadata matched to a taxonomic ID from here.
Host-virus data
Hosts per virus
Considering only the 511 coronaviruses with available spike protein sequence data…
Number of hosts per coronavirus, EID2:| 0 | 1 | 2 | 3 | 5 | 6 | 8 | 15 | 18 | 26 | 38 | 48 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 457 | 38 | 3 | 4 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| childtaxa_name | eid2_n_species |
|---|---|
| Avian coronavirus | 48 |
| Bat coronavirus | 38 |
| Betacoronavirus 1 | 26 |
| Alphacoronavirus 1 | 18 |
| Severe acute respiratory syndrome-related coronavirus | 15 |
| Human coronavirus 229E | 8 |
| Murine coronavirus | 6 |
| Middle East respiratory syndrome-related coronavirus | 5 |
| Rousettus bat coronavirus HKU9 | 5 |
| Longquan Aa mouse coronavirus | 3 |
| Longquan Rl rat coronavirus | 3 |
| Rhinolophus bat coronavirus HKU2 | 3 |
| Miniopterus bat coronavirus HKU8 | 3 |
| Porcine epidemic diarrhea virus | 2 |
| Scotophilus bat coronavirus 512 | 2 |
| Pipistrellus bat coronavirus HKU5 | 2 |
| Ferret coronavirus 511c | 1 |
| Ferret coronavirus 4E98 | 1 |
| Ferret coronavirus | 1 |
| Bat SARS-like coronavirus Rs3262-1 | 1 |
| Bat SARS-like coronavirus Rs3262-2 | 1 |
| Bat SARS-like coronavirus Rs3267-1 | 1 |
| Bat SARS-like coronavirus Rs3267-2 | 1 |
| Bat SARS-like coronavirus Rs3369 | 1 |
| Bat SARS-like coronavirus Rs4075 | 1 |
| Bat SARS-like coronavirus Rs4079 | 1 |
| Bat SARS-like coronavirus Rs4080 | 1 |
| Bat SARS-like coronavirus Rs4081 | 1 |
| Bat SARS-like coronavirus Rs4084 | 1 |
| Bat SARS-like coronavirus Rs4085 | 1 |
| Bat SARS-like coronavirus Rs4087-1 | 1 |
| Bat SARS-like coronavirus Rs4087-2 | 1 |
| Bat SARS-like coronavirus Rs4090 | 1 |
| Bat SARS-like coronavirus Rs4092 | 1 |
| Bat SARS-like coronavirus Rs4096 | 1 |
| Bat SARS-like coronavirus Rs4097 | 1 |
| Bat SARS-like coronavirus Rs4105 | 1 |
| Bat SARS-like coronavirus Rs4108 | 1 |
| Bat SARS-like coronavirus Rs4110 | 1 |
| Human coronavirus Feline-like Hu142 | 1 |
| Lucheng Rn rat coronavirus | 1 |
| Wencheng Sm shrew coronavirus | 1 |
| Betacoronavirus HKU24 | 1 |
| SARS-like coronavirus WIV16 | 1 |
| Swine enteric coronavirus | 1 |
| Alpaca coronavirus | 1 |
| Scotophilus kuhlii coronavirus | 1 |
| Rousettus bat coronavirus | 1 |
| Rabbit coronavirus | 1 |
| Severe acute respiratory syndrome coronavirus 2 | 1 |
| Human coronavirus NL63 | 1 |
| Human coronavirus HKU1 | 1 |
| Tylonycteris bat coronavirus HKU4 | 1 |
| Beluga whale coronavirus SW1 | 1 |
| Rm-Bat-CoV 453/2007/EF | 0 |
| Feline coronavirus UU47 | 0 |
| Feline coronavirus UU54 | 0 |
| Bat coronavirus M.ful/Japan/03/2009 | 0 |
| Bat coronavirus M.ful/Japan/04/2010 | 0 |
| Infectious bronchitis virus | 0 |
| Avian infectious bronchitis virus (strain M41) | 0 |
| Bovine coronavirus | 0 |
| Feline infectious peritonitis virus | 0 |
| Murine hepatitis virus | 0 |
| Murine hepatitis virus strain A59 | 0 |
| Murine hepatitis virus strain JHM | 0 |
| Porcine respiratory coronavirus | 0 |
| Transmissible gastroenteritis virus | 0 |
| Turkey coronavirus | 0 |
| Canine coronavirus | 0 |
| Common moorhen coronavirus HKU21 | 0 |
| Magpie-robin coronavirus HKU18 | 0 |
| Night heron coronavirus HKU19 | 0 |
| Porcine coronavirus HKU15 | 0 |
| Sparrow coronavirus HKU17 | 0 |
| White-eye coronavirus HKU16 | 0 |
| Wigeon coronavirus HKU20 | 0 |
| Rabbit coronavirus HKU14 | 0 |
| Murine hepatitis virus strain S/3239-17 | 0 |
| Alpaca respiratory coronavirus | 0 |
| Murine hepatitis virus strain ML-11 | 0 |
| Human betacoronavirus 2c EMC/2012 | 0 |
| Hipposideros bat coronavirus HKU10 | 0 |
| Rousettus bat coronavirus HKU10 | 0 |
| Guinea fowl coronavirus GfCoV/FR/2011 | 0 |
| Betacoronavirus England 1 | 0 |
| Feline coronavirus | 0 |
| Betacoronavirus BtCoV/KW2E-F93/Nyc_spec/GHA/2010 | 0 |
| Bat coronavirus Rp/Shaanxi2011 | 0 |
| Bat coronavirus Cp/Yunnan2011 | 0 |
| Bat coronavirus BtCoV/8-691/Pip_nat/ROU/2009 | 0 |
| Bat coronavirus BtCoV/8-724/Pip_pyg/ROU/2009 | 0 |
| Bat coronavirus BtCoV/UKR-G17/Pip_nat/UKR/2011 | 0 |
| Human betacoronavirus 2c England-Qatar/2012 | 0 |
| Human betacoronavirus 2c Jordan-N3/2012 | 0 |
| shorebird coronavirus | 0 |
| Equine coronavirus | 0 |
| Coronavirus Neoromicia/PML-PHE1/RSA/2011 | 0 |
| Bat coronavirus CDPHE15/USA/2006 | 0 |
| Betacoronavirus Erinaceus/VMC/DEU/2012 | 0 |
| Bat SARS-like coronavirus Rs3367 | 0 |
| Bat SARS-like coronavirus RsSHC014 | 0 |
| Bat SARS-like coronavirus WIV1 | 0 |
| Bottlenose dolphin coronavirus HKU22 | 0 |
| Deltacoronavirus PDCoV/USA/Illinois121/2014 | 0 |
| Porcine deltacoronavirus 8734/USA-IA/2014 | 0 |
| Deltacoronavirus PDCoV/USA/Illinois133/2014 | 0 |
| Deltacoronavirus PDCoV/USA/Illinois134/2014 | 0 |
| Deltacoronavirus PDCoV/USA/Illinois136/2014 | 0 |
| Deltacoronavirus PDCoV/USA/Ohio137/2014 | 0 |
| Dromedary camel coronavirus HKU23 | 0 |
| Mystacina coronavirus New Zealand/2013 | 0 |
| BtVs-BetaCoV/SC2013 | 0 |
| BtMf-AlphaCoV/AH2011 | 0 |
| BtMf-AlphaCoV/FJ2012 | 0 |
| BtMf-AlphaCoV/GD2012 | 0 |
| BtMf-AlphaCoV/GD2012-a | 0 |
| BtMf-AlphaCoV/GD2012-b | 0 |
| BtMf-AlphaCoV/HeN2013 | 0 |
| BtMf-AlphaCoV/HuB2013 | 0 |
| BtMf-AlphaCoV/HuB2013-a | 0 |
| BtMf-AlphaCoV/JX2012 | 0 |
| BtMr-AlphaCoV/SAX2011 | 0 |
| BtMs-AlphaCoV/GS2013 | 0 |
| BtNv-AlphaCoV/SC2013 | 0 |
| BtRf-AlphaCoV/HuB2013 | 0 |
| BtRf-AlphaCoV/YN2012 | 0 |
| BtPa-BetaCoV/GD2013 | 0 |
| BtRf-BetaCoV/HeB2013 | 0 |
| BtRf-BetaCoV/HeN2013 | 0 |
| BtRf-BetaCoV/HuB2013 | 0 |
| BtRf-BetaCoV/JL2012 | 0 |
| BtRf-BetaCoV/SX2013 | 0 |
| BtRs-BetaCoV/GX2013 | 0 |
| BtRs-BetaCoV/HuB2013 | 0 |
| BtRs-BetaCoV/YN2013 | 0 |
| BtTp-BetaCoV/GX2012 | 0 |
| Bat SARS-like coronavirus | 0 |
| Porcine epidemic diarrhea virus L00721/GER/2014 | 0 |
| Swine deltacoronavirus OhioCVM1/2014 | 0 |
| Bat Hp-betacoronavirus/Zhejiang2013 | 0 |
| Porcine deltacoronavirus KNU14-04 | 0 |
| Porcine deltacoronavirus | 0 |
| Avian infectious bronchitis virus (strain Beaudette US) | 0 |
| Human enteric coronavirus 4408 | 0 |
| Camel alphacoronavirus | 0 |
| Camel coronavirus HKU23 | 0 |
| Bat SARS-like coronavirus YNLF_31C | 0 |
| Bat SARS-like coronavirus YNLF_34C | 0 |
| SARS-like coronavirus BatCoV/BB9904/BGR/2008 | 0 |
| 229E-related bat coronavirus | 0 |
| European turkey coronavirus 080385d | 0 |
| Bat coroanvirus MsBtCoV/4001-1 | 0 |
| Bat coronavirus MfulBtCoV/3709 | 0 |
| Bat coronavirus MfulBtCoV/3736-1 | 0 |
| Bat coronavirus MfulBtCoV/3759-1 | 0 |
| Bat coronavirus MsBtCoV/3710 | 0 |
| Bat coronavirus MsBtCoV/4056 | 0 |
| Bat coronavirus MsBtCoV/4068 | 0 |
| Bat coronavirus RsBtCoV/3716 | 0 |
| Bat coronavirus/4539/2013/Cynomops planirostris/Brazil | 0 |
| Bat coronavirus/4705/2013/Cynomops abrasus/Brazil | 0 |
| Camel alphacoronavirus Camel229E | 0 |
| NL63-related bat coronavirus | 0 |
| Coronavirus AcCoV-JC34 | 0 |
| Coronavirus HKU15 | 0 |
| Hedgehog coronavirus 1 | 0 |
| Porcine enteric alphacoronavirus | 0 |
| Hypsugo bat coronavirus HKU25 | 0 |
| Myotis lucifugus coronavirus | 0 |
| Equine coronavirus NC99 | 0 |
| Porcine enteric alphacoronavirus GDS04 | 0 |
| Swine acute diarrhea syndrome coronavirus | 0 |
| Swine enteric alphacoronavirus | 0 |
| Rodent coronavirus | 0 |
| Shrew coronavirus | 0 |
| Falcon coronavirus UAE-HKU27 | 0 |
| Houbara coronavirus UAE-HKU28 | 0 |
| Quail coronavirus UAE-HKU30 | 0 |
| Pigeon coronavirus UAE-HKU29 | 0 |
| Porcine deltacoronavirus Sichuan | 0 |
| Swine acute diarrhea syndrome related coronavirus | 0 |
| Guangdong chinese water skink coronavirus | 0 |
| Water deer coronavirus | 0 |
| Canine respiratory coronavirus | 0 |
| Alphacoronavirus Mink/China/1/2016 | 0 |
| Sparrow deltacoronavirus | 0 |
| Quail deltacoronavirus | 0 |
| SARS coronavirus Urbani | 0 |
| SARS coronavirus HKU-39849 | 0 |
| SARS coronavirus BJ01 | 0 |
| SARS coronavirus CUHK-W1 | 0 |
| SARS coronavirus CUHK-Su10 | 0 |
| SARS coronavirus Frankfurt 1 | 0 |
| SARS coronavirus TW1 | 0 |
| SARS coronavirus ZJ01 | 0 |
| Avian infectious bronchitis virus (strain H120) | 0 |
| SARS coronavirus GD01 | 0 |
| Guinea fowl coronavirus | 0 |
| SARS coronavirus HSR 1 | 0 |
| SARS coronavirus Shanhgai LY | 0 |
| SARS coronavirus Taiwan TC1 | 0 |
| SARS coronavirus Taiwan TC2 | 0 |
| SARS coronavirus CUHK-AG01 | 0 |
| SARS coronavirus CUHK-AG02 | 0 |
| SARS coronavirus CUHK-AG03 | 0 |
| SARS coronavirus Taiwan TC3 | 0 |
| SARS coronavirus TWH | 0 |
| SARS coronavirus TWJ | 0 |
| SARS coronavirus TWK | 0 |
| SARS coronavirus TWS | 0 |
| SARS coronavirus TWY | 0 |
| Bat alphacoronavirus | 0 |
| Feline alphacoronavirus 1 | 0 |
| SARS coronavirus FRA | 0 |
| SARS coronavirus AS | 0 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206645-41/2011 | 0 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206679-3/2010 | 0 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015 | 0 |
| Yak coronavirus | 0 |
| Alphacoronavirus UKMa1 | 0 |
| Alphacoronavirus UKRn3 | 0 |
| SARS coronavirus BJ302 | 0 |
| SARS coronavirus PUMC01 | 0 |
| SARS coronavirus PUMC02 | 0 |
| SARS coronavirus PUMC03 | 0 |
| SARS coronavirus GZ02 | 0 |
| Canada goose coronavirus | 0 |
| SARS coronavirus ShanghaiQXC1 | 0 |
| SARS coronavirus ShanghaiQXC2 | 0 |
| Rhinolophus bat coronavirus HKU32 | 0 |
| Tylonycteris bat coronavirus HKU33 | 0 |
| Pheasant coronavirus | 0 |
| SARS coronavirus TW10 | 0 |
| SARS coronavirus TW11 | 0 |
| SARS coronavirus TW2 | 0 |
| SARS coronavirus TW3 | 0 |
| SARS coronavirus TW4 | 0 |
| SARS coronavirus TW5 | 0 |
| SARS coronavirus TW6 | 0 |
| SARS coronavirus TW7 | 0 |
| SARS coronavirus TW8 | 0 |
| SARS coronavirus TW9 | 0 |
| Coronavirus BtSk-AlphaCoV/GX2018A | 0 |
| Coronavirus BtSk-AlphaCoV/GX2018B | 0 |
| Coronavirus BtSk-AlphaCoV/GX2018C | 0 |
| Coronavirus BtSk-AlphaCoV/GX2018D | 0 |
| Coronavirus BtRs-AlphaCoV/YN2018 | 0 |
| Coronavirus BtRl-BetaCoV/SC2018 | 0 |
| Coronavirus BtRs-BetaCoV/YN2018A | 0 |
| Coronavirus BtRs-BetaCoV/YN2018B | 0 |
| Coronavirus BtRs-BetaCoV/YN2018C | 0 |
| Coronavirus BtRs-BetaCoV/YN2018D | 0 |
| Coronavirus BtRt-BetaCoV/GX2018 | 0 |
| SARS coronavirus CUHK-L2 | 0 |
| SARS coronavirus NS-1 | 0 |
| SARS coronavirus GD03T0013 | 0 |
| SARS coronavirus TW-HP1 | 0 |
| SARS coronavirus TW-HP2 | 0 |
| SARS coronavirus TW-HP3 | 0 |
| SARS coronavirus TW-HP4 | 0 |
| SARS coronavirus TW-JC2 | 0 |
| SARS coronavirus TW-KC1 | 0 |
| SARS coronavirus TW-KC3 | 0 |
| SARS coronavirus TW-GD1 | 0 |
| SARS coronavirus TW-GD2 | 0 |
| SARS coronavirus TW-GD3 | 0 |
| SARS coronavirus TW-GD4 | 0 |
| SARS coronavirus TW-GD5 | 0 |
| SARS coronavirus TW-YM1 | 0 |
| SARS coronavirus TW-YM2 | 0 |
| SARS coronavirus TW-YM3 | 0 |
| SARS coronavirus TW-YM4 | 0 |
| SARS coronavirus TW-PH1 | 0 |
| SARS coronavirus TW-PH2 | 0 |
| SARS coronavirus cw049 | 0 |
| SARS coronavirus sf098 | 0 |
| SARS coronavirus cw037 | 0 |
| Erinaceus hedgehog coronavirus HKU31 | 0 |
| Rousettus aegyptiacus bat coronavirus 229E-related | 0 |
| Miniopterus pusillus bat coronavirus HKU8-related | 0 |
| Miniopterus schreibersii bat coronavirus 1-related | 0 |
| Tylonycteris pachypus bat coronavirus HKU4-related | 0 |
| Pipistrellus abramus bat coronavirus HKU5-related | 0 |
| Scotophilus kuhlii bat coronavirus 512-related | 0 |
| Hipposideros pomona bat coronavirus HKU10-related | 0 |
| Hipposideros pomona bat coronavirus CHB25 | 0 |
| Human group 1 coronavirus associated with pneumonia | 0 |
| Pangolin coronavirus | 0 |
| Bat coronavirus RaTG13 | 0 |
| Bottlenose dolphin coronavirus | 0 |
| SARS coronavirus LLJ-2004 | 0 |
| Avian infectious bronchitis virus partridge/GD/S14/2003 | 0 |
| SARS coronavirus TJF | 0 |
| SARS coronavirus HHS-2004 | 0 |
| Civet SARS CoV 007/2004 | 0 |
| SARS coronavirus civet010 | 0 |
| SARS coronavirus civet014 | 0 |
| SARS coronavirus civet019 | 0 |
| SARS coronavirus civet020 | 0 |
| SARS coronavirus GD322 | 0 |
| SARS Coronavirus CDC#200301157 | 0 |
| SARS coronavirus PC4-127 | 0 |
| SARS coronavirus PC4-205 | 0 |
| SARS coronavirus GZ0403 | 0 |
| SARS coronavirus PC4-115 | 0 |
| SARS coronavirus PC4-137 | 0 |
| SARS coronavirus PC4-145 | 0 |
| SARS coronavirus PC4-199 | 0 |
| SARS coronavirus PC4-241 | 0 |
| SARS coronavirus B039 | 0 |
| Duck coronavirus | 0 |
| Pigeon coronavirus | 0 |
| Canine coronavirus 1-71 | 0 |
| SARS coronavirus A022 | 0 |
| SARS coronavirus A001 | 0 |
| SARS coronavirus A013 | 0 |
| SARS coronavirus A021 | 0 |
| SARS coronavirus A030 | 0 |
| SARS coronavirus A031 | 0 |
| SARS coronavirus B012 | 0 |
| SARS coronavirus B024 | 0 |
| SARS coronavirus B029 | 0 |
| SARS coronavirus B033 | 0 |
| SARS coronavirus B040 | 0 |
| SARS coronavirus C013 | 0 |
| SARS coronavirus C014 | 0 |
| SARS coronavirus C017 | 0 |
| SARS coronavirus C018 | 0 |
| SARS coronavirus C019 | 0 |
| SARS coronavirus C025 | 0 |
| SARS coronavirus C028 | 0 |
| SARS coronavirus C029 | 0 |
| SARS coronavirus WH20 | 0 |
| Human coronavirus OC43 | 0 |
| Rat coronavirus | 0 |
| SARS coronavirus BJ162 | 0 |
| SARS coronavirus BJ202 | 0 |
| Canine coronavirus isolate NJ17 | 0 |
| Bat SARS coronavirus HKU3-1 | 0 |
| Bat SARS coronavirus HKU3-2 | 0 |
| Bat SARS coronavirus HKU3-3 | 0 |
| SARS coronavirus ZJ0301 | 0 |
| Bat SARS CoV Rm1/2004 | 0 |
| Bat SARS CoV Rf1/2004 | 0 |
| Bat SARS CoV Rp3/2004 | 0 |
| SARS coronavirus ZJ02 | 0 |
| Spotted hyena coronavirus | 0 |
| Ferret enteric coronavirus MSU1 | 0 |
| SARS coronavirus CS21 | 0 |
| SARS coronavirus CS24 | 0 |
| SARS coronavirus ES191 | 0 |
| SARS coronavirus ES260 | 0 |
| SARS coronavirus WF188 | 0 |
| Bat coronavirus Fujian/773/2005 | 0 |
| Bat coronavirus Anhui/911/2005 | 0 |
| Bat coronavirus Shandong/977/2006 | 0 |
| Bat CoV 273/2005 | 0 |
| Bat CoV 279/2005 | 0 |
| Bat coronavirus (BtCoV/133/2005) | 0 |
| Bat coronavirus (BtCoV/A434/2005) | 0 |
| Bat coronavirus A515/2005 | 0 |
| Bat coronavirus A527/2005 | 0 |
| Bat coronavirus A701/2005 | 0 |
| SARS coronavirus Frankfurt1-v01 | 0 |
| Bat coronavirus 1A | 0 |
| Bat coronavirus 1B | 0 |
| Bovine coronavirus DB2 | 0 |
| TGEV Miller M6 | 0 |
| TGEV Miller M60 | 0 |
| TGEV Purdue P115 | 0 |
| TGEV virulent Purdue | 0 |
| PRCV ISU-1 | 0 |
| Bovine coronavirus isolate Alpaca | 0 |
| Infectious bronchitis virus PRT/L-898/2004 | 0 |
| Infectious bronchitis virus AZE/L-1582/2004 | 0 |
| Infectious bronchitis virus RUS/L-1777/2005 | 0 |
| Infectious bronchitis virus YEM/L-2865/2005 | 0 |
| Porcine hemagglutinating encephalomyelitis virus | 0 |
| Sambar deer coronavirus US/OH-WD388/1994 | 0 |
| Sambar deer coronavirus US/OH-WD388-TC/1994 | 0 |
| White-tailed deer coronavirus US/OH-WD470/1994 | 0 |
| Waterbuck coronavirus US/OH-WD358/1994 | 0 |
| Waterbuck coronavirus US/OH-WD358-TC/1994 | 0 |
| Sable antelope coronavirus US/OH1/2003 | 0 |
| Giraffe coronavirus US/OH3/2003 | 0 |
| Calf-giraffe coronavirus US/OH3/2006 | 0 |
| Giraffe coronavirus US/OH3-TC/2006 | 0 |
| Bovine coronavirus R-AH65 | 0 |
| Bovine coronavirus R-AH65-TC | 0 |
| Bovine coronavirus E-DB2-TC | 0 |
| Bovine coronavirus E-AH65 | 0 |
| Bovine coronavirus E-AH65-TC | 0 |
| Bovine coronavirus R-AH187 | 0 |
| Bovine coronavirus E-AH187 | 0 |
| Bat coronavirus HKU4-1 | 0 |
| Bat coronavirus HKU4-2 | 0 |
| Bat coronavirus HKU4-3 | 0 |
| Bat coronavirus HKU4-4 | 0 |
| Bat coronavirus HKU5-1 | 0 |
| Bat coronavirus HKU5-2 | 0 |
| Bat coronavirus HKU5-3 | 0 |
| Bat coronavirus HKU5-5 | 0 |
| Bat coronavirus HKU9-1 | 0 |
| Bat coronavirus HKU9-2 | 0 |
| Bat coronavirus HKU9-3 | 0 |
| Bat coronavirus HKU9-4 | 0 |
| Murine coronavirus repJHM/RA59 | 0 |
| Murine coronavirus repA59/RJHM | 0 |
| Murine coronavirus SA59/RJHM | 0 |
| Quail coronavirus Italy/Elvia/2005 | 0 |
| Raccoon dog coronavirus GZ43/2003 | 0 |
| Chinese ferret badger coronavirus DM95/2003 | 0 |
| Asian leopard cat coronavirus Guangxi/F230/2006 | 0 |
| Chinese ferret badger coronavirus Guangxi/F247/2006 | 0 |
| Chinese ferret badger coronavirus Guangxi/F250/2006 | 0 |
| Feline coronavirus UU3 | 0 |
| Feline coronavirus UU4 | 0 |
| Feline coronavirus UU5 | 0 |
| Feline coronavirus UU7 | 0 |
| Bovine coronavirus E-AH187-TC | 0 |
| Bovine coronavirus Bubalus/Italy/179/07-11 | 0 |
| Waterbuck coronavirus US/OH-WD358-GnC/1994 | 0 |
| Feline coronavirus RM | 0 |
| Feline coronavirus UU2 | 0 |
| Rat coronavirus Parker | 0 |
| Murine coronavirus MHV-3 | 0 |
| Bovine respiratory coronavirus bovine/US/OH-440-TC/1996 | 0 |
| Murine coronavirus MHV-1 | 0 |
| Murine coronavirus RA59/SJHM | 0 |
| Bovine respiratory coronavirus AH187 | 0 |
| SARS coronavirus BJ182-12 | 0 |
| SARS coronavirus BJ182-4 | 0 |
| SARS coronavirus BJ182-8 | 0 |
| SARS coronavirus BJ182a | 0 |
| SARS coronavirus BJ182b | 0 |
| Bulbul coronavirus HKU11-796 | 0 |
| Bulbul coronavirus HKU11-934 | 0 |
| Munia coronavirus HKU13-3514 | 0 |
| Thrush coronavirus HKU12-600 | 0 |
| Murine coronavirus MHV-JHM.IA | 0 |
| Murine coronavirus RA59/R13 | 0 |
| Murine coronavirus RJHM/A | 0 |
| Murine coronavirus inf-MHV-A59 | 0 |
| Feline coronavirus UU10 | 0 |
| Feline coronavirus UU11 | 0 |
| Feline coronavirus UU15 | 0 |
| Feline coronavirus UU16 | 0 |
| Feline coronavirus UU8 | 0 |
| Feline coronavirus UU9 | 0 |
| Human enteric coronavirus strain 4408 | 0 |
| SARS coronavirus ExoN1 | 0 |
| SARS coronavirus P2 | 0 |
| SARS coronavirus MA15 | 0 |
| SARS coronavirus MA15 ExoN1 | 0 |
| Infectious bronchitis virus ITA/90254/2005 | 0 |
| Infectious bronchitis virus NGA/A116E7/2006 | 0 |
| Bat SARS Cov Rs806/2006 | 0 |
| Miniopterus bat coronavirus 1 | 0 |
| SARS coronavirus wtic-MB | 0 |
| Bovine coronavirus Bubalus/339/ITA/2007 | 0 |
| Bovine coronavirus Bubalus/82/ITA/2008 | 0 |
| Bovine coronavirus Bubalus/153/ITA/2008 | 0 |
| Bovine coronavirus Bubalus/155/ITA/2008 | 0 |
| Feline coronavirus UU22 | 0 |
| Feline coronavirus UU23 | 0 |
| SARS coronavirus Rs_672/2006 | 0 |
| Ferret enteric coronavirus 1202 | 0 |
| Ferret systemic coronavirus MSU-S | 0 |
| Ferret systemic coronavirus WADL | 0 |
| Ferret enteric coronavirus | 0 |
| Bat SARS coronavirus HKU3-10 | 0 |
| Bat SARS coronavirus HKU3-11 | 0 |
| Bat SARS coronavirus HKU3-12 | 0 |
| Bat SARS coronavirus HKU3-13 | 0 |
| Bat SARS coronavirus HKU3-4 | 0 |
| Bat SARS coronavirus HKU3-5 | 0 |
| Bat SARS coronavirus HKU3-6 | 0 |
| Bat SARS coronavirus HKU3-7 | 0 |
| Bat SARS coronavirus HKU3-8 | 0 |
| Bat SARS coronavirus HKU3-9 | 0 |
| Ferret systemic coronavirus | 0 |
| Murine hepatitis virus strain 2 | 0 |
| Mink coronavirus strain WD1127 | 0 |
| Mink coronavirus strain WD1133 | 0 |
| Bat coronavirus BM48-31/BGR/2008 | 0 |
| Feline coronavirus UU17 | 0 |
| Feline coronavirus UU18 | 0 |
| Feline coronavirus UU21 | 0 |
| Feline coronavirus UU24 | 0 |
| Feline coronavirus UU31 | 0 |
| Feline coronavirus UU34 | 0 |
| Bat coronavirus HKU9-10-1 | 0 |
| Bat coronavirus HKU9-10-2 | 0 |
| Bat coronavirus HKU9-5-1 | 0 |
| Bat coronavirus HKU9-5-2 | 0 |
| Feline coronavirus UU19 | 0 |
| Feline coronavirus UU20 | 0 |
| Feline coronavirus UU30 | 0 |
| Feline coronavirus UU40 | 0 |
| Rat sialodacryoadenitis coronavirus | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P3-C766/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-287740/IT/USA/2009 | 0 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-265225/IT/USA/2009 | 0 |
| Cardioderma bat coronavirus/Kenya/KY43/2006 | 0 |
| Chaerephon bat coronavirus/Kenya/KY41/2006 | 0 |
| Eidolon bat coronavirus/Kenya/KY24/2006 | 0 |
| Rousettus bat coronavirus/Kenya/KY06/2006 | 0 |
| Miniopterus bat coronavirus/Kenya/KY27/2006 | 0 |
| Miniopterus bat coronavirus/Kenya/KY33/2006 | 0 |
| Chaerephon bat coronavirus/Kenya/KY22/2006 | 0 |
| 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 10 | 17 | 19 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 217 | 277 | 6 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| childtaxa_name | n_species |
|---|---|
| Avian coronavirus | 19 |
| Bat coronavirus | 17 |
| Rodent coronavirus | 10 |
| Middle East respiratory syndrome-related coronavirus | 8 |
| Bovine coronavirus | 7 |
| Infectious bronchitis virus | 6 |
| Betacoronavirus 1 | 5 |
| Canine coronavirus | 4 |
| Bat SARS-like coronavirus | 4 |
| Longquan Rl rat coronavirus | 3 |
| 229E-related bat coronavirus | 3 |
| Equine coronavirus | 2 |
| Porcine deltacoronavirus | 2 |
| SARS coronavirus HKU-39849 | 2 |
| Bat alphacoronavirus | 2 |
| Human coronavirus OC43 | 2 |
| Alphacoronavirus 1 | 2 |
| Rm-Bat-CoV 453/2007/EF | 1 |
| Feline coronavirus UU47 | 1 |
| Feline coronavirus UU54 | 1 |
| Bat coronavirus M.ful/Japan/03/2009 | 1 |
| Bat coronavirus M.ful/Japan/04/2010 | 1 |
| Ferret coronavirus 511c | 1 |
| Ferret coronavirus 4E98 | 1 |
| Feline infectious peritonitis virus | 1 |
| Human coronavirus 229E | 1 |
| Murine hepatitis virus | 1 |
| Porcine respiratory coronavirus | 1 |
| Transmissible gastroenteritis virus | 1 |
| Turkey coronavirus | 1 |
| Common moorhen coronavirus HKU21 | 1 |
| Porcine coronavirus HKU15 | 1 |
| Rabbit coronavirus HKU14 | 1 |
| Alpaca respiratory coronavirus | 1 |
| Human betacoronavirus 2c EMC/2012 | 1 |
| Betacoronavirus England 1 | 1 |
| Ferret coronavirus | 1 |
| Feline coronavirus | 1 |
| Bat coronavirus Rp/Shaanxi2011 | 1 |
| Bat coronavirus Cp/Yunnan2011 | 1 |
| Bat coronavirus BtCoV/8-691/Pip_nat/ROU/2009 | 1 |
| Bat coronavirus BtCoV/8-724/Pip_pyg/ROU/2009 | 1 |
| Bat coronavirus BtCoV/UKR-G17/Pip_nat/UKR/2011 | 1 |
| Human betacoronavirus 2c England-Qatar/2012 | 1 |
| Human betacoronavirus 2c Jordan-N3/2012 | 1 |
| Coronavirus Neoromicia/PML-PHE1/RSA/2011 | 1 |
| Bat coronavirus CDPHE15/USA/2006 | 1 |
| Betacoronavirus Erinaceus/VMC/DEU/2012 | 1 |
| Bat SARS-like coronavirus Rs3262-1 | 1 |
| Bat SARS-like coronavirus Rs3262-2 | 1 |
| Bat SARS-like coronavirus Rs3267-1 | 1 |
| Bat SARS-like coronavirus Rs3267-2 | 1 |
| Bat SARS-like coronavirus Rs3367 | 1 |
| Bat SARS-like coronavirus Rs3369 | 1 |
| Bat SARS-like coronavirus Rs4075 | 1 |
| Bat SARS-like coronavirus Rs4079 | 1 |
| Bat SARS-like coronavirus Rs4080 | 1 |
| Bat SARS-like coronavirus Rs4081 | 1 |
| Bat SARS-like coronavirus Rs4084 | 1 |
| Bat SARS-like coronavirus Rs4085 | 1 |
| Bat SARS-like coronavirus Rs4087-1 | 1 |
| Bat SARS-like coronavirus Rs4087-2 | 1 |
| Bat SARS-like coronavirus Rs4090 | 1 |
| Bat SARS-like coronavirus Rs4092 | 1 |
| Bat SARS-like coronavirus Rs4096 | 1 |
| Bat SARS-like coronavirus Rs4097 | 1 |
| Bat SARS-like coronavirus Rs4105 | 1 |
| Bat SARS-like coronavirus Rs4108 | 1 |
| Bat SARS-like coronavirus Rs4110 | 1 |
| Bat SARS-like coronavirus RsSHC014 | 1 |
| Bat SARS-like coronavirus WIV1 | 1 |
| Human coronavirus Feline-like Hu142 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois121/2014 | 1 |
| Porcine deltacoronavirus 8734/USA-IA/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois133/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois134/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Illinois136/2014 | 1 |
| Deltacoronavirus PDCoV/USA/Ohio137/2014 | 1 |
| Dromedary camel coronavirus HKU23 | 1 |
| Mystacina coronavirus New Zealand/2013 | 1 |
| BtVs-BetaCoV/SC2013 | 1 |
| BtMf-AlphaCoV/AH2011 | 1 |
| BtMf-AlphaCoV/FJ2012 | 1 |
| BtMf-AlphaCoV/GD2012 | 1 |
| BtMf-AlphaCoV/GD2012-a | 1 |
| BtMf-AlphaCoV/GD2012-b | 1 |
| BtMf-AlphaCoV/HeN2013 | 1 |
| BtMf-AlphaCoV/HuB2013 | 1 |
| BtMf-AlphaCoV/HuB2013-a | 1 |
| BtMf-AlphaCoV/JX2012 | 1 |
| BtMr-AlphaCoV/SAX2011 | 1 |
| BtNv-AlphaCoV/SC2013 | 1 |
| BtRf-AlphaCoV/HuB2013 | 1 |
| BtRf-AlphaCoV/YN2012 | 1 |
| BtPa-BetaCoV/GD2013 | 1 |
| BtRf-BetaCoV/HeB2013 | 1 |
| BtRf-BetaCoV/HeN2013 | 1 |
| BtRf-BetaCoV/HuB2013 | 1 |
| BtRf-BetaCoV/JL2012 | 1 |
| BtRf-BetaCoV/SX2013 | 1 |
| BtRs-BetaCoV/GX2013 | 1 |
| BtRs-BetaCoV/HuB2013 | 1 |
| BtRs-BetaCoV/YN2013 | 1 |
| BtTp-BetaCoV/GX2012 | 1 |
| Longquan Aa mouse coronavirus | 1 |
| Lucheng Rn rat coronavirus | 1 |
| Wencheng Sm shrew coronavirus | 1 |
| Swine deltacoronavirus OhioCVM1/2014 | 1 |
| Bat Hp-betacoronavirus/Zhejiang2013 | 1 |
| Porcine deltacoronavirus KNU14-04 | 1 |
| Betacoronavirus HKU24 | 1 |
| Human enteric coronavirus 4408 | 1 |
| Bat SARS-like coronavirus YNLF_31C | 1 |
| Bat SARS-like coronavirus YNLF_34C | 1 |
| SARS-like coronavirus BatCoV/BB9904/BGR/2008 | 1 |
| SARS-like coronavirus WIV16 | 1 |
| European turkey coronavirus 080385d | 1 |
| Swine enteric coronavirus | 1 |
| Alpaca coronavirus | 1 |
| Bat coroanvirus MsBtCoV/4001-1 | 1 |
| Bat coronavirus MfulBtCoV/3709 | 1 |
| Bat coronavirus MfulBtCoV/3736-1 | 1 |
| Bat coronavirus MfulBtCoV/3759-1 | 1 |
| Bat coronavirus MsBtCoV/3710 | 1 |
| Bat coronavirus MsBtCoV/4056 | 1 |
| Bat coronavirus MsBtCoV/4068 | 1 |
| Bat coronavirus RsBtCoV/3716 | 1 |
| Bat coronavirus/4539/2013/Cynomops planirostris/Brazil | 1 |
| Bat coronavirus/4705/2013/Cynomops abrasus/Brazil | 1 |
| Scotophilus kuhlii coronavirus | 1 |
| Rousettus bat coronavirus | 1 |
| Camel alphacoronavirus Camel229E | 1 |
| Rabbit coronavirus | 1 |
| NL63-related bat coronavirus | 1 |
| Coronavirus AcCoV-JC34 | 1 |
| Coronavirus HKU15 | 1 |
| Hedgehog coronavirus 1 | 1 |
| Porcine enteric alphacoronavirus | 1 |
| Hypsugo bat coronavirus HKU25 | 1 |
| Myotis lucifugus coronavirus | 1 |
| Porcine enteric alphacoronavirus GDS04 | 1 |
| Swine acute diarrhea syndrome coronavirus | 1 |
| Swine enteric alphacoronavirus | 1 |
| Shrew coronavirus | 1 |
| Porcine deltacoronavirus Sichuan | 1 |
| Guangdong chinese water skink coronavirus | 1 |
| Water deer coronavirus | 1 |
| Canine respiratory coronavirus | 1 |
| Quail deltacoronavirus | 1 |
| Feline alphacoronavirus 1 | 1 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206645-41/2011 | 1 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/206679-3/2010 | 1 |
| Alphacoronavirus Bat-CoV/P.kuhlii/Italy/3398-19/2015 | 1 |
| Yak coronavirus | 1 |
| Alphacoronavirus UKMa1 | 1 |
| Alphacoronavirus UKRn3 | 1 |
| Canada goose coronavirus | 1 |
| Rhinolophus bat coronavirus HKU32 | 1 |
| Tylonycteris bat coronavirus HKU33 | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018A | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018B | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018C | 1 |
| Coronavirus BtSk-AlphaCoV/GX2018D | 1 |
| Coronavirus BtRs-AlphaCoV/YN2018 | 1 |
| Coronavirus BtRs-BetaCoV/YN2018A | 1 |
| Coronavirus BtRs-BetaCoV/YN2018B | 1 |
| Coronavirus BtRs-BetaCoV/YN2018C | 1 |
| Coronavirus BtRs-BetaCoV/YN2018D | 1 |
| Coronavirus BtRt-BetaCoV/GX2018 | 1 |
| Erinaceus hedgehog coronavirus HKU31 | 1 |
| Rousettus aegyptiacus bat coronavirus 229E-related | 1 |
| Miniopterus pusillus bat coronavirus HKU8-related | 1 |
| Miniopterus schreibersii bat coronavirus 1-related | 1 |
| Tylonycteris pachypus bat coronavirus HKU4-related | 1 |
| Pipistrellus abramus bat coronavirus HKU5-related | 1 |
| Scotophilus kuhlii bat coronavirus 512-related | 1 |
| Hipposideros pomona bat coronavirus HKU10-related | 1 |
| Hipposideros pomona bat coronavirus CHB25 | 1 |
| Severe acute respiratory syndrome coronavirus 2 | 1 |
| Pangolin coronavirus | 1 |
| Bat coronavirus RaTG13 | 1 |
| Human coronavirus NL63 | 1 |
| Porcine epidemic diarrhea virus | 1 |
| Human coronavirus HKU1 | 1 |
| Duck coronavirus | 1 |
| Pigeon coronavirus | 1 |
| Canine coronavirus isolate NJ17 | 1 |
| Bat SARS CoV Rm1/2004 | 1 |
| Bat SARS CoV Rf1/2004 | 1 |
| Ferret enteric coronavirus MSU1 | 1 |
| Bat coronavirus Fujian/773/2005 | 1 |
| Bat coronavirus Anhui/911/2005 | 1 |
| Bat coronavirus Shandong/977/2006 | 1 |
| Bovine coronavirus DB2 | 1 |
| TGEV Miller M6 | 1 |
| TGEV Miller M60 | 1 |
| TGEV Purdue P115 | 1 |
| TGEV virulent Purdue | 1 |
| PRCV ISU-1 | 1 |
| Bovine coronavirus isolate Alpaca | 1 |
| Infectious bronchitis virus PRT/L-898/2004 | 1 |
| Infectious bronchitis virus AZE/L-1582/2004 | 1 |
| Infectious bronchitis virus RUS/L-1777/2005 | 1 |
| Infectious bronchitis virus YEM/L-2865/2005 | 1 |
| Porcine hemagglutinating encephalomyelitis virus | 1 |
| Sambar deer coronavirus US/OH-WD388/1994 | 1 |
| Sambar deer coronavirus US/OH-WD388-TC/1994 | 1 |
| White-tailed deer coronavirus US/OH-WD470/1994 | 1 |
| Waterbuck coronavirus US/OH-WD358/1994 | 1 |
| Waterbuck coronavirus US/OH-WD358-TC/1994 | 1 |
| Giraffe coronavirus US/OH3/2003 | 1 |
| Calf-giraffe coronavirus US/OH3/2006 | 1 |
| Giraffe coronavirus US/OH3-TC/2006 | 1 |
| Bovine coronavirus R-AH65 | 1 |
| Bovine coronavirus R-AH65-TC | 1 |
| Bovine coronavirus E-DB2-TC | 1 |
| Bovine coronavirus E-AH65 | 1 |
| Bovine coronavirus E-AH65-TC | 1 |
| Bovine coronavirus R-AH187 | 1 |
| Bovine coronavirus E-AH187 | 1 |
| Murine coronavirus repJHM/RA59 | 1 |
| Murine coronavirus repA59/RJHM | 1 |
| Murine coronavirus SA59/RJHM | 1 |
| Feline coronavirus UU3 | 1 |
| Feline coronavirus UU4 | 1 |
| Feline coronavirus UU5 | 1 |
| Feline coronavirus UU7 | 1 |
| Bovine coronavirus E-AH187-TC | 1 |
| Bovine coronavirus Bubalus/Italy/179/07-11 | 1 |
| Waterbuck coronavirus US/OH-WD358-GnC/1994 | 1 |
| Feline coronavirus RM | 1 |
| Feline coronavirus UU2 | 1 |
| Murine coronavirus MHV-3 | 1 |
| Bovine respiratory coronavirus bovine/US/OH-440-TC/1996 | 1 |
| Murine coronavirus MHV-1 | 1 |
| Murine coronavirus RA59/SJHM | 1 |
| Bovine respiratory coronavirus AH187 | 1 |
| Bulbul coronavirus HKU11-796 | 1 |
| Bulbul coronavirus HKU11-934 | 1 |
| Munia coronavirus HKU13-3514 | 1 |
| Thrush coronavirus HKU12-600 | 1 |
| Murine coronavirus MHV-JHM.IA | 1 |
| Murine coronavirus RA59/R13 | 1 |
| Murine coronavirus RJHM/A | 1 |
| Murine coronavirus inf-MHV-A59 | 1 |
| Feline coronavirus UU10 | 1 |
| Feline coronavirus UU11 | 1 |
| Feline coronavirus UU15 | 1 |
| Feline coronavirus UU16 | 1 |
| Feline coronavirus UU8 | 1 |
| Feline coronavirus UU9 | 1 |
| Human enteric coronavirus strain 4408 | 1 |
| SARS coronavirus P2 | 1 |
| SARS coronavirus MA15 | 1 |
| SARS coronavirus MA15 ExoN1 | 1 |
| Bat SARS Cov Rs806/2006 | 1 |
| Rhinolophus bat coronavirus HKU2 | 1 |
| Murine coronavirus | 1 |
| Severe acute respiratory syndrome-related coronavirus | 1 |
| Beluga whale coronavirus SW1 | 1 |
| Bovine coronavirus Bubalus/339/ITA/2007 | 1 |
| Bovine coronavirus Bubalus/82/ITA/2008 | 1 |
| Bovine coronavirus Bubalus/153/ITA/2008 | 1 |
| Bovine coronavirus Bubalus/155/ITA/2008 | 1 |
| Feline coronavirus UU22 | 1 |
| Feline coronavirus UU23 | 1 |
| SARS coronavirus Rs_672/2006 | 1 |
| Ferret enteric coronavirus 1202 | 1 |
| Ferret systemic coronavirus MSU-S | 1 |
| Ferret systemic coronavirus WADL | 1 |
| Ferret enteric coronavirus | 1 |
| Ferret systemic coronavirus | 1 |
| Mink coronavirus strain WD1127 | 1 |
| Mink coronavirus strain WD1133 | 1 |
| Bat coronavirus BM48-31/BGR/2008 | 1 |
| Feline coronavirus UU17 | 1 |
| Feline coronavirus UU18 | 1 |
| Feline coronavirus UU21 | 1 |
| Feline coronavirus UU24 | 1 |
| Feline coronavirus UU31 | 1 |
| Feline coronavirus UU34 | 1 |
| Feline coronavirus UU19 | 1 |
| Feline coronavirus UU20 | 1 |
| Feline coronavirus UU30 | 1 |
| Feline coronavirus UU40 | 1 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P3-C766/IT/USA/2009 | 1 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-287740/IT/USA/2009 | 1 |
| Alphacoronavirus Eptesicus fuscus/Appalachian Ridge/P1-265225/IT/USA/2009 | 1 |
| Cardioderma bat coronavirus/Kenya/KY43/2006 | 1 |
| Chaerephon bat coronavirus/Kenya/KY41/2006 | 1 |
| Eidolon bat coronavirus/Kenya/KY24/2006 | 1 |
| Rousettus bat coronavirus/Kenya/KY06/2006 | 1 |
| Miniopterus bat coronavirus/Kenya/KY27/2006 | 1 |
| Miniopterus bat coronavirus/Kenya/KY33/2006 | 1 |
| Avian infectious bronchitis virus (strain M41) | 0 |
| Murine hepatitis virus strain A59 | 0 |
| Murine hepatitis virus strain JHM | 0 |
| Magpie-robin coronavirus HKU18 | 0 |
| Night heron coronavirus HKU19 | 0 |
| Sparrow coronavirus HKU17 | 0 |
| White-eye coronavirus HKU16 | 0 |
| Wigeon coronavirus HKU20 | 0 |
| Murine hepatitis virus strain S/3239-17 | 0 |
| Murine hepatitis virus strain ML-11 | 0 |
| Hipposideros bat coronavirus HKU10 | 0 |
| Rousettus bat coronavirus HKU10 | 0 |
| Guinea fowl coronavirus GfCoV/FR/2011 | 0 |
| Betacoronavirus BtCoV/KW2E-F93/Nyc_spec/GHA/2010 | 0 |
| shorebird coronavirus | 0 |
| Bottlenose dolphin coronavirus HKU22 | 0 |
| BtMs-AlphaCoV/GS2013 | 0 |
| Porcine epidemic diarrhea virus L00721/GER/2014 | 0 |
| Avian infectious bronchitis virus (strain Beaudette US) | 0 |
| Camel alphacoronavirus | 0 |
| Camel coronavirus HKU23 | 0 |
| Equine coronavirus NC99 | 0 |
| Falcon coronavirus UAE-HKU27 | 0 |
| Houbara coronavirus UAE-HKU28 | 0 |
| Quail coronavirus UAE-HKU30 | 0 |
| Pigeon coronavirus UAE-HKU29 | 0 |
| Swine acute diarrhea syndrome related coronavirus | 0 |
| Alphacoronavirus Mink/China/1/2016 | 0 |
| Sparrow deltacoronavirus | 0 |
| SARS coronavirus Urbani | 0 |
| SARS coronavirus BJ01 | 0 |
| SARS coronavirus CUHK-W1 | 0 |
| SARS coronavirus CUHK-Su10 | 0 |
| SARS coronavirus Frankfurt 1 | 0 |
| SARS coronavirus TW1 | 0 |
| SARS coronavirus ZJ01 | 0 |
| Avian infectious bronchitis virus (strain H120) | 0 |
| SARS coronavirus GD01 | 0 |
| Guinea fowl coronavirus | 0 |
| SARS coronavirus HSR 1 | 0 |
| SARS coronavirus Shanhgai LY | 0 |
| SARS coronavirus Taiwan TC1 | 0 |
| SARS coronavirus Taiwan TC2 | 0 |
| SARS coronavirus CUHK-AG01 | 0 |
| SARS coronavirus CUHK-AG02 | 0 |
| SARS coronavirus CUHK-AG03 | 0 |
| SARS coronavirus Taiwan TC3 | 0 |
| SARS coronavirus TWH | 0 |
| SARS coronavirus TWJ | 0 |
| SARS coronavirus TWK | 0 |
| SARS coronavirus TWS | 0 |
| SARS coronavirus TWY | 0 |
| SARS coronavirus FRA | 0 |
| SARS coronavirus AS | 0 |
| SARS coronavirus BJ302 | 0 |
| SARS coronavirus PUMC01 | 0 |
| SARS coronavirus PUMC02 | 0 |
| SARS coronavirus PUMC03 | 0 |
| SARS coronavirus GZ02 | 0 |
| SARS coronavirus ShanghaiQXC1 | 0 |
| SARS coronavirus ShanghaiQXC2 | 0 |
| Pheasant coronavirus | 0 |
| SARS coronavirus TW10 | 0 |
| SARS coronavirus TW11 | 0 |
| SARS coronavirus TW2 | 0 |
| SARS coronavirus TW3 | 0 |
| SARS coronavirus TW4 | 0 |
| SARS coronavirus TW5 | 0 |
| SARS coronavirus TW6 | 0 |
| SARS coronavirus TW7 | 0 |
| SARS coronavirus TW8 | 0 |
| SARS coronavirus TW9 | 0 |
| Coronavirus BtRl-BetaCoV/SC2018 | 0 |
| SARS coronavirus CUHK-L2 | 0 |
| SARS coronavirus NS-1 | 0 |
| SARS coronavirus GD03T0013 | 0 |
| SARS coronavirus TW-HP1 | 0 |
| SARS coronavirus TW-HP2 | 0 |
| SARS coronavirus TW-HP3 | 0 |
| SARS coronavirus TW-HP4 | 0 |
| SARS coronavirus TW-JC2 | 0 |
| SARS coronavirus TW-KC1 | 0 |
| SARS coronavirus TW-KC3 | 0 |
| SARS coronavirus TW-GD1 | 0 |
| SARS coronavirus TW-GD2 | 0 |
| SARS coronavirus TW-GD3 | 0 |
| SARS coronavirus TW-GD4 | 0 |
| SARS coronavirus TW-GD5 | 0 |
| SARS coronavirus TW-YM1 | 0 |
| SARS coronavirus TW-YM2 | 0 |
| SARS coronavirus TW-YM3 | 0 |
| SARS coronavirus TW-YM4 | 0 |
| SARS coronavirus TW-PH1 | 0 |
| SARS coronavirus TW-PH2 | 0 |
| SARS coronavirus cw049 | 0 |
| SARS coronavirus sf098 | 0 |
| SARS coronavirus cw037 | 0 |
| Human group 1 coronavirus associated with pneumonia | 0 |
| Bottlenose dolphin coronavirus | 0 |
| SARS coronavirus LLJ-2004 | 0 |
| Avian infectious bronchitis virus partridge/GD/S14/2003 | 0 |
| SARS coronavirus TJF | 0 |
| SARS coronavirus HHS-2004 | 0 |
| Civet SARS CoV 007/2004 | 0 |
| SARS coronavirus civet010 | 0 |
| SARS coronavirus civet014 | 0 |
| SARS coronavirus civet019 | 0 |
| SARS coronavirus civet020 | 0 |
| SARS coronavirus GD322 | 0 |
| SARS Coronavirus CDC#200301157 | 0 |
| SARS coronavirus PC4-127 | 0 |
| SARS coronavirus PC4-205 | 0 |
| SARS coronavirus GZ0403 | 0 |
| SARS coronavirus PC4-115 | 0 |
| SARS coronavirus PC4-137 | 0 |
| SARS coronavirus PC4-145 | 0 |
| SARS coronavirus PC4-199 | 0 |
| SARS coronavirus PC4-241 | 0 |
| SARS coronavirus B039 | 0 |
| Canine coronavirus 1-71 | 0 |
| SARS coronavirus A022 | 0 |
| SARS coronavirus A001 | 0 |
| SARS coronavirus A013 | 0 |
| SARS coronavirus A021 | 0 |
| SARS coronavirus A030 | 0 |
| SARS coronavirus A031 | 0 |
| SARS coronavirus B012 | 0 |
| SARS coronavirus B024 | 0 |
| SARS coronavirus B029 | 0 |
| SARS coronavirus B033 | 0 |
| SARS coronavirus B040 | 0 |
| SARS coronavirus C013 | 0 |
| SARS coronavirus C014 | 0 |
| SARS coronavirus C017 | 0 |
| SARS coronavirus C018 | 0 |
| SARS coronavirus C019 | 0 |
| SARS coronavirus C025 | 0 |
| SARS coronavirus C028 | 0 |
| SARS coronavirus C029 | 0 |
| SARS coronavirus WH20 | 0 |
| Rat coronavirus | 0 |
| SARS coronavirus BJ162 | 0 |
| SARS coronavirus BJ202 | 0 |
| Bat SARS coronavirus HKU3-1 | 0 |
| Bat SARS coronavirus HKU3-2 | 0 |
| Bat SARS coronavirus HKU3-3 | 0 |
| SARS coronavirus ZJ0301 | 0 |
| Bat SARS CoV Rp3/2004 | 0 |
| SARS coronavirus ZJ02 | 0 |
| Spotted hyena coronavirus | 0 |
| SARS coronavirus CS21 | 0 |
| SARS coronavirus CS24 | 0 |
| SARS coronavirus ES191 | 0 |
| SARS coronavirus ES260 | 0 |
| SARS coronavirus WF188 | 0 |
| Bat CoV 273/2005 | 0 |
| Bat CoV 279/2005 | 0 |
| Bat coronavirus (BtCoV/133/2005) | 0 |
| Bat coronavirus (BtCoV/A434/2005) | 0 |
| Bat coronavirus A515/2005 | 0 |
| Bat coronavirus A527/2005 | 0 |
| Bat coronavirus A701/2005 | 0 |
| SARS coronavirus Frankfurt1-v01 | 0 |
| Bat coronavirus 1A | 0 |
| Bat coronavirus 1B | 0 |
| Sable antelope coronavirus US/OH1/2003 | 0 |
| Bat coronavirus HKU4-1 | 0 |
| Bat coronavirus HKU4-2 | 0 |
| Bat coronavirus HKU4-3 | 0 |
| Bat coronavirus HKU4-4 | 0 |
| Bat coronavirus HKU5-1 | 0 |
| Bat coronavirus HKU5-2 | 0 |
| Bat coronavirus HKU5-3 | 0 |
| Bat coronavirus HKU5-5 | 0 |
| Bat coronavirus HKU9-1 | 0 |
| Bat coronavirus HKU9-2 | 0 |
| Bat coronavirus HKU9-3 | 0 |
| Bat coronavirus HKU9-4 | 0 |
| Quail coronavirus Italy/Elvia/2005 | 0 |
| Raccoon dog coronavirus GZ43/2003 | 0 |
| Chinese ferret badger coronavirus DM95/2003 | 0 |
| Asian leopard cat coronavirus Guangxi/F230/2006 | 0 |
| Chinese ferret badger coronavirus Guangxi/F247/2006 | 0 |
| Chinese ferret badger coronavirus Guangxi/F250/2006 | 0 |
| Rat coronavirus Parker | 0 |
| SARS coronavirus BJ182-12 | 0 |
| SARS coronavirus BJ182-4 | 0 |
| SARS coronavirus BJ182-8 | 0 |
| SARS coronavirus BJ182a | 0 |
| SARS coronavirus BJ182b | 0 |
| SARS coronavirus ExoN1 | 0 |
| Infectious bronchitis virus ITA/90254/2005 | 0 |
| Infectious bronchitis virus NGA/A116E7/2006 | 0 |
| Scotophilus bat coronavirus 512 | 0 |
| Miniopterus bat coronavirus 1 | 0 |
| Miniopterus bat coronavirus HKU8 | 0 |
| Rousettus bat coronavirus HKU9 | 0 |
| Tylonycteris bat coronavirus HKU4 | 0 |
| Pipistrellus bat coronavirus HKU5 | 0 |
| SARS coronavirus wtic-MB | 0 |
| Bat SARS coronavirus HKU3-10 | 0 |
| Bat SARS coronavirus HKU3-11 | 0 |
| Bat SARS coronavirus HKU3-12 | 0 |
| Bat SARS coronavirus HKU3-13 | 0 |
| Bat SARS coronavirus HKU3-4 | 0 |
| Bat SARS coronavirus HKU3-5 | 0 |
| Bat SARS coronavirus HKU3-6 | 0 |
| Bat SARS coronavirus HKU3-7 | 0 |
| Bat SARS coronavirus HKU3-8 | 0 |
| Bat SARS coronavirus HKU3-9 | 0 |
| Murine hepatitis virus strain 2 | 0 |
| Bat coronavirus HKU9-10-1 | 0 |
| Bat coronavirus HKU9-10-2 | 0 |
| Bat coronavirus HKU9-5-1 | 0 |
| Bat coronavirus HKU9-5-2 | 0 |
| Rat sialodacryoadenitis coronavirus | 0 |
| Chaerephon bat coronavirus/Kenya/KY22/2006 | 0 |
Number of host species, host groups per coronavirus is skewed as expected. Coronaviruses with broadest host range include very wide species that encompass many individual strains..
Distributions of n higher host taxa per coronavirus, host metdata labels:| 0 | 1 | 2 |
|---|---|---|
| 156 | 353 | 2 |
| 0 | 1 | 2 | 3 | 4 | 11 |
|---|---|---|---|---|---|
| 156 | 348 | 3 | 2 | 1 | 1 |
| 0 | 1 | 2 | 3 | 4 | 5 | 15 |
|---|---|---|---|---|---|---|
| 181 | 317 | 6 | 3 | 2 | 1 | 1 |
| 0 | 1 | 2 | 3 | 4 |
|---|---|---|---|---|
| 196 | 307 | 5 | 2 | 1 |
Viruses per host
Number of coronaviruses per host, EID2:| 1 | 2 | 3 | 4 | 5 | 7 | 23 |
|---|---|---|---|---|---|---|
| 124 | 20 | 4 | 2 | 2 | 1 | 1 |
| Host | n |
|---|---|
| rhinolophus sinicus | 23 |
| homo sapiens | 7 |
| sus scrofa | 5 |
| vicugna pacos | 5 |
| mustela putorius | 4 |
| rattus norvegicus | 4 |
| camelus dromedarius | 3 |
| miniopterus schreibersii | 3 |
| rousettus leschenaultii | 3 |
| scotophilus kuhlii | 3 |
| buteo magnirostris | 2 |
| canis lupus familiaris | 2 |
| columba livia | 2 |
| coragyps atratus | 2 |
| megascops choliba | 2 |
| miniopterus magnater | 2 |
| mus musculus | 2 |
| myotis emarginatus | 2 |
| pipistrellus abramus | 2 |
| pitangus sulphuratus | 2 |
| pseudoscops clamator | 2 |
| pyroderus scutatus | 2 |
| rattus losea | 2 |
| rhinolophus ferrumequinum | 2 |
| rhinolophus macrotis | 2 |
| rhinolophus pearsonii | 2 |
| rhinolophus rex | 2 |
| rousettus aegyptiacus | 2 |
| tylonycteris pachypus | 2 |
| vespertilio sinensis | 2 |
| acinonyx jubatus | 1 |
| agamia agami | 1 |
| ailuropoda melanoleuca | 1 |
| amazona vinacea | 1 |
| anas acuta | 1 |
| anas clypeata | 1 |
| anas crecca | 1 |
| anas platyrhynchos | 1 |
| anas poecilorhyncha | 1 |
| anser anser | 1 |
| anser caerulescens | 1 |
| apodemus agrarius | 1 |
| aptenodytes patagonicus | 1 |
| ara ararauna | 1 |
| ardea cinerea | 1 |
| ardeola bacchus | 1 |
| aselliscus stoliczkanus | 1 |
| aythya fuligula | 1 |
| aythya marila | 1 |
| bos indicus | 1 |
| bos taurus | 1 |
| bubalus bubalis | 1 |
| bubulcus ibis | 1 |
| calidris mauri | 1 |
| calidris ptilocnemis | 1 |
| canis latrans | 1 |
| canis lupus | 1 |
| canis mesomelas | 1 |
| caracara plancus | 1 |
| cavia porcellus | 1 |
| chlorocebus aethiops | 1 |
| chroicocephalus ridibundus | 1 |
| colaptes campestris | 1 |
| corvus splendens | 1 |
| coturnix coturnix | 1 |
| cricetulus griseus | 1 |
| crocuta crocuta | 1 |
| cygnus cygnus | 1 |
| cynopterus brachyotis | 1 |
| cynopterus sphinx | 1 |
| delphinapterus leucas | 1 |
| dendrocygna javanica | 1 |
| eidolon helvum | 1 |
| eonycteris spelaea | 1 |
| eptesicus serotinus | 1 |
| equus caballus | 1 |
| felis catus | 1 |
| felis silvestris | 1 |
| gallus gallus | 1 |
| giraffa camelopardalis | 1 |
| glossophaga soricina | 1 |
| hemitragus jemlahicus | 1 |
| hipposideros abae | 1 |
| hipposideros armiger | 1 |
| hipposideros caffer | 1 |
| hipposideros cf. ruber | 1 |
| hipposideros cineraceus | 1 |
| hipposideros larvatus | 1 |
| hipposideros lekaguli | 1 |
| hipposideros pratti | 1 |
| hipposideros ruber | 1 |
| hipposideros vittatus | 1 |
| ia io | 1 |
| kobus ellipsiprymnus | 1 |
| larus glaucescens | 1 |
| leopardus pardalis | 1 |
| lonchura striata | 1 |
| mareca americana | 1 |
| mareca penelope | 1 |
| mareca strepera | 1 |
| megaderma lyra | 1 |
| megaerops kusnotoi | 1 |
| meleagris gallopavo | 1 |
| melogale moschata | 1 |
| miniopterus fuliginosus | 1 |
| miniopterus pusillus | 1 |
| molossus molossus | 1 |
| murina leucogaster | 1 |
| mus cervicolor | 1 |
| myotis daubentonii | 1 |
| myotis davidii | 1 |
| myotis fimbriatus | 1 |
| myotis horsfieldii | 1 |
| myotis lucifugus | 1 |
| myotis pequinius | 1 |
| myotis ricketti | 1 |
| myotis siligorensis | 1 |
| neoromicia capensis | 1 |
| niviventer confucianus | 1 |
| nyctereutes procyonoides | 1 |
| nycticebus pygmaeus | 1 |
| odocoileus virginianus | 1 |
| oryctolagus cuniculus | 1 |
| paguma larvata | 1 |
| panthera leo | 1 |
| paradoxurus hermaphroditus | 1 |
| passer domesticus | 1 |
| pavo cristatus | 1 |
| penelope superciliaris | 1 |
| phalacrocorax carbo | 1 |
| phasianus colchicus | 1 |
| pipistrellus coromandra | 1 |
| pipistrellus pipistrellus | 1 |
| platalea minor | 1 |
| porphyrio martinica | 1 |
| pteropus alecto | 1 |
| pteropus giganteus | 1 |
| puma concolor | 1 |
| puma yagouaroundi | 1 |
| rattus tanezumi | 1 |
| rhinolophus affinis | 1 |
| rhinolophus monoceros | 1 |
| rhinolophus pusillus | 1 |
| rhinolophus shameli | 1 |
| rhinolophus thomasi | 1 |
| rousettus amplexicaudatus | 1 |
| rusa unicolor | 1 |
| scotophilus heathii | 1 |
| spheniscus magellanicus | 1 |
| suncus murinus | 1 |
| taphozous melanopogon | 1 |
| tragelaphus angasii | 1 |
| tragelaphus spekii | 1 |
| turdus hortulorum | 1 |
Also heavily skewed as expected, some commonly studied species (ferret, rat, domestic pig, human), plus livestock (alpaca) and one horseshoe bat, sequences mostly derive from a single study
Number of sequences/coronaviruses per host, host metadata labels:| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 13 | 14 | 17 | 43 | 47 | 55 | 56 | 59 | 322 | 355 | 422 | 574 | 2515 | 3669 | 5393 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 54 | 32 | 12 | 6 | 4 | 4 | 2 | 4 | 1 | 3 | 1 | 1 | 3 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| 1 | 2 | 3 | 4 | 6 | 7 | 8 | 9 | 13 | 14 | 15 | 17 | 27 | 30 | 33 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 97 | 18 | 6 | 5 | 3 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 |
| species_name | n_sequences | n_species |
|---|---|---|
| Gallus gallus | 5393 | 7 |
| Sus scrofa | 3669 | 27 |
| Homo sapiens | 2515 | 17 |
| Felis catus | 574 | 30 |
| Camelus dromedarius | 422 | 4 |
| Bos taurus | 355 | 13 |
| Canis lupus | 322 | 4 |
| Meleagris gallopavo | 59 | 3 |
| Mus musculus | 56 | 15 |
| Bos grunniens | 55 | 2 |
| Rhinolophus sinicus | 47 | 33 |
| Mustela putorius | 43 | 9 |
| Rhinolophus ferrumequinum | 17 | 13 |
| Miniopterus fuliginosus | 14 | 14 |
| Miniopterus schreibersii | 14 | 8 |
| Vicugna pacos | 14 | 3 |
| Crocuta crocuta | 13 | 1 |
| Columba livia | 11 | 2 |
| Anas platyrhynchos | 10 | 3 |
| Bubulcus ibis | 10 | 1 |
| Suncus murinus | 10 | 1 |
| Equus caballus | 9 | 2 |
| Coragyps atratus | 8 | 1 |
| Hipposideros cf. ruber | 8 | 1 |
| Oryctolagus cuniculus | 8 | 2 |
| Rattus norvegicus | 8 | 4 |
| Anas crecca | 7 | 1 |
| Bubalus bubalis | 7 | 6 |
| Eidolon helvum | 6 | 2 |
| Hipposideros abae | 6 | 1 |
| Rhinolophus affinis | 6 | 6 |
| Scotophilus kuhlii | 6 | 6 |
| Coturnix coturnix | 5 | 1 |
| Megascops choliba | 5 | 1 |
| Pipistrellus kuhlii | 5 | 4 |
| Tylonycteris pachypus | 5 | 3 |
| Eptesicus fuscus | 4 | 4 |
| Erinaceus europaeus | 4 | 2 |
| Manis javanica | 4 | 1 |
| Pan troglodytes | 4 | 1 |
| Rupornis magnirostris | 4 | 1 |
| Triaenops afer | 4 | 1 |
| Bos indicus | 3 | 1 |
| Capra hircus | 3 | 1 |
| Corvus splendens | 3 | 1 |
| Equus asinus | 3 | 2 |
| Giraffa camelopardalis | 3 | 3 |
| Kobus ellipsiprymnus | 3 | 3 |
| Myodes rufocanus | 3 | 1 |
| Myotis lucifugus | 3 | 2 |
| Neovison vison | 3 | 2 |
| Pitangus sulphuratus | 3 | 1 |
| Rhinolophus cornutus | 3 | 1 |
| Rusa unicolor | 3 | 2 |
| Amazona vinacea | 2 | 1 |
| Apodemus chevrieri | 2 | 1 |
| Branta canadensis | 2 | 1 |
| Caracara plancus | 2 | 1 |
| Colaptes campestris | 2 | 1 |
| Delphinapterus leucas | 2 | 1 |
| Erinaceus amurensis | 2 | 1 |
| Gallinula chloropus | 2 | 1 |
| Hemitragus jemlahicus | 2 | 1 |
| Hipposideros pratti | 2 | 1 |
| Hypsugo pulveratus | 2 | 1 |
| Lonchura striata | 2 | 1 |
| Myotis daubentonii | 2 | 2 |
| Myotis macrodactylus | 2 | 1 |
| Myotis ricketti | 2 | 1 |
| Neoromicia capensis | 2 | 2 |
| Nyctalus velutinus | 2 | 1 |
| Passer domesticus | 2 | 1 |
| Pipistrellus abramus | 2 | 2 |
| Pipistrellus hesperidus | 2 | 1 |
| Pipistrellus nathusii | 2 | 2 |
| Pseudoscops clamator | 2 | 1 |
| Pycnonotus jocosus | 2 | 1 |
| Pyroderus scutatus | 2 | 1 |
| Rattus losea | 2 | 2 |
| Rhinolophus blasii | 2 | 1 |
| Rhinolophus pusillus | 2 | 2 |
| Rousettus aegyptiacus | 2 | 2 |
| Rousettus leschenaultii | 2 | 1 |
| Sorex araneus | 2 | 1 |
| Turdus hortulorum | 2 | 1 |
| Vespertilio sinensis | 2 | 2 |
| Ailuropoda melanoleuca | 1 | 1 |
| Allactaga sibirica | 1 | 1 |
| Anas gracilis | 1 | 1 |
| Anser sp. | 1 | 1 |
| Apodemus agrarius | 1 | 1 |
| Apodemus peninsulae | 1 | 1 |
| Aselliscus stoliczkanus | 1 | 1 |
| Bandicota indica | 1 | 1 |
| Bison bonasus | 1 | 1 |
| Canis mesomelas | 1 | 1 |
| Cardioderma cor | 1 | 1 |
| Chaerephon plicatus | 1 | 1 |
| Chaerephon pumilus | 1 | 1 |
| Chinchilla lanigera | 1 | 1 |
| Chlorocebus aethiops | 1 | 1 |
| Coturnix japonica | 1 | 1 |
| Cynomops abrasus | 1 | 1 |
| Cynomops planirostris | 1 | 1 |
| Cynopterus brachyotis | 1 | 1 |
| Cynopterus sphinx | 1 | 1 |
| Eptesicus japonensis | 1 | 1 |
| Hipposideros larvatus | 1 | 1 |
| Hipposideros pomona | 1 | 1 |
| Hipposideros vittatus | 1 | 1 |
| Hydropotes inermis | 1 | 1 |
| Hypsugo savii | 1 | 1 |
| Lama glama | 1 | 1 |
| Meriones meridianus | 1 | 1 |
| Microtus agrestis | 1 | 1 |
| Miniopterus inflatus | 1 | 1 |
| Miniopterus natalensis | 1 | 1 |
| Miniopterus pusillus | 1 | 1 |
| Murina leucogaster | 1 | 1 |
| Myotis brandtii | 1 | 1 |
| Myotis davidii | 1 | 1 |
| Myotis emarginatus | 1 | 1 |
| Myotis ikonnikovi | 1 | 1 |
| Myotis siligorensis | 1 | 1 |
| Mystacina tuberculata | 1 | 1 |
| Niviventer confucianus | 1 | 1 |
| Niviventer niviventer | 1 | 1 |
| Odocoileus virginianus | 1 | 1 |
| Phasianus colchicus | 1 | 1 |
| Pipistrellus pygmaeus | 1 | 1 |
| Pycnonotus sinensis | 1 | 1 |
| Rattus tanezumi | 1 | 1 |
| Rhinolophus euryale | 1 | 1 |
| Rhinolophus macrotis | 1 | 1 |
| Rhinolophus monoceros | 1 | 1 |
| Tadorna tadornoides | 1 | 1 |
| Tragelaphus angasii | 1 | 1 |
| Tragelaphus spekii | 1 | 1 |
| Tropidophorus sinicus | 1 | 1 |
| Tylonycteris robustula | 1 | 1 |
| class_name | n_sequences | n_species |
|---|---|---|
| Mammalia | 8611 | 324 |
| Aves | 5607 | 32 |
| Lepidosauria | 1 | 1 |
| order_name | n_sequences | n_species |
|---|---|---|
| Galliformes | 5496 | 14 |
| Artiodactyla | 4685 | 67 |
| Primates | 2520 | 17 |
| Carnivora | 976 | 58 |
| Chiroptera | 297 | 154 |
| Rodentia | 90 | 25 |
| Anseriformes | 30 | 5 |
| Passeriformes | 27 | 9 |
| Eulipotyphla | 18 | 5 |
| Accipitriformes | 12 | 1 |
| Columbiformes | 12 | 3 |
| Pelecaniformes | 12 | 2 |
| Perissodactyla | 12 | 3 |
| Lagomorpha | 8 | 2 |
| Strigiformes | 7 | 1 |
| Pholidota | 5 | 1 |
| Falconiformes | 3 | 2 |
| Gruiformes | 3 | 2 |
| Piciformes | 2 | 1 |
| Psittaciformes | 2 | 1 |
| Charadriiformes | 1 | 1 |
| Squamata | 1 | 1 |
| family_name | n_sequences | n_species |
|---|---|---|
| Phasianidae | 5492 | 12 |
| Suidae | 3669 | 27 |
| Hominidae | 2519 | 17 |
| Felidae | 574 | 30 |
| Camelidae | 569 | 9 |
| Bovidae | 433 | 24 |
| Canidae | 324 | 4 |
| Rhinolophidae | 105 | 57 |
| Vespertilionidae | 86 | 58 |
| Muridae | 84 | 24 |
| Mustelidae | 47 | 12 |
| Anatidae | 30 | 5 |
| Hipposideridae | 21 | 5 |
| Hyaenidae | 13 | 1 |
| Pteropodidae | 13 | 7 |
| Ardeidae | 12 | 2 |
| Columbidae | 12 | 3 |
| Equidae | 12 | 3 |
| Soricidae | 12 | 2 |
| Viverridae | 12 | 12 |
| Cathartidae | 8 | 1 |
| Leporidae | 8 | 2 |
| Strigidae | 7 | 1 |
| Erinaceidae | 6 | 3 |
| Cervidae | 5 | 4 |
| Manidae | 5 | 1 |
| Molossidae | 5 | 5 |
| Odobenidae | 5 | 1 |
| Accipitridae | 4 | 1 |
| Cricetidae | 4 | 2 |
| Delphinidae | 4 | 1 |
| Rhinonycteridae | 4 | 1 |
| Corvidae | 3 | 1 |
| Falconidae | 3 | 2 |
| Giraffidae | 3 | 3 |
| Pycnonotidae | 3 | 2 |
| Tyrannidae | 3 | 1 |
| Cotingidae | 2 | 1 |
| Estrildidae | 2 | 1 |
| Monodontidae | 2 | 1 |
| Muscicapidae | 2 | 1 |
| Numididae | 2 | 1 |
| Passeridae | 2 | 1 |
| Picidae | 2 | 1 |
| Psittacidae | 2 | 1 |
| Rallidae | 2 | 1 |
| Turdidae | 2 | 1 |
| Zosteropidae | 2 | 1 |
| Cercopithecidae | 1 | 1 |
| Chinchillidae | 1 | 1 |
| Dipodidae | 1 | 1 |
| Megadermatidae | 1 | 1 |
| Mystacinidae | 1 | 1 |
| Nycteridae | 1 | 1 |
| Otididae | 1 | 1 |
| Scincidae | 1 | 1 |
| Ursidae | 1 | 1 |
| genus_name | n_sequences | n_species |
|---|---|---|
| Gallus | 5412 | 7 |
| Sus | 3669 | 27 |
| Homo | 2515 | 17 |
| Felis | 574 | 30 |
| Camelus | 554 | 6 |
| Bos | 413 | 14 |
| Canis | 323 | 4 |
| Rhinolophus | 105 | 57 |
| Mus | 61 | 16 |
| Meleagris | 59 | 3 |
| Mustela | 43 | 9 |
| Miniopterus | 32 | 26 |
| Anas | 24 | 3 |
| Hipposideros | 20 | 4 |
| Myotis | 15 | 7 |
| Rattus | 15 | 7 |
| Vicugna | 14 | 3 |
| Crocuta | 13 | 1 |
| Equus | 12 | 3 |
| Pipistrellus | 12 | 10 |
| Columba | 11 | 2 |
| Bubulcus | 10 | 1 |
| Suncus | 10 | 1 |
| Coragyps | 8 | 1 |
| Oryctolagus | 8 | 2 |
| Bubalus | 7 | 6 |
| Coturnix | 6 | 2 |
| Eidolon | 6 | 2 |
| Erinaceus | 6 | 3 |
| Scotophilus | 6 | 6 |
| Tylonycteris | 6 | 4 |
| Eptesicus | 5 | 5 |
| Megascops | 5 | 1 |
| Odobenus | 5 | 1 |
| Rousettus | 5 | 4 |
| Apodemus | 4 | 3 |
| Manis | 4 | 1 |
| Pan | 4 | 1 |
| Triaenops | 4 | 1 |
| Tursiops | 4 | 1 |
| Capra | 3 | 1 |
| Chaerephon | 3 | 3 |
| Corvus | 3 | 1 |
| Giraffa | 3 | 3 |
| Hypsugo | 3 | 2 |
| Kobus | 3 | 3 |
| Myodes | 3 | 1 |
| Neovison | 3 | 2 |
| Pitangus | 3 | 1 |
| Pycnonotus | 3 | 2 |
| Rusa | 3 | 2 |
| Amazona | 2 | 1 |
| Branta | 2 | 1 |
| Caracara | 2 | 1 |
| Colaptes | 2 | 1 |
| Copsychus | 2 | 1 |
| Cynomops | 2 | 2 |
| Cynopterus | 2 | 2 |
| Delphinapterus | 2 | 1 |
| Gallinula | 2 | 1 |
| Hemitragus | 2 | 1 |
| Lonchura | 2 | 1 |
| Mareca | 2 | 1 |
| Neoromicia | 2 | 2 |
| Niviventer | 2 | 2 |
| Nyctalus | 2 | 1 |
| Passer | 2 | 1 |
| Pseudoscops | 2 | 1 |
| Pyroderus | 2 | 1 |
| Sorex | 2 | 1 |
| Tragelaphus | 2 | 1 |
| Turdus | 2 | 1 |
| Vespertilio | 2 | 2 |
| Ailuropoda | 1 | 1 |
| Allactaga | 1 | 1 |
| Anser | 1 | 1 |
| Aselliscus | 1 | 1 |
| Bandicota | 1 | 1 |
| Bison | 1 | 1 |
| Cardioderma | 1 | 1 |
| Chinchilla | 1 | 1 |
| Chlamydotis | 1 | 1 |
| Chlorocebus | 1 | 1 |
| Falco | 1 | 1 |
| Hydropotes | 1 | 1 |
| Lama | 1 | 1 |
| Meriones | 1 | 1 |
| Microtus | 1 | 1 |
| Murina | 1 | 1 |
| Mystacina | 1 | 1 |
| Nycteris | 1 | 1 |
| Odocoileus | 1 | 1 |
| Phasianus | 1 | 1 |
| Tadorna | 1 | 1 |
| Tropidophorus | 1 | 1 |
| group_name | n_sequences | n_species |
|---|---|---|
| aves | 5607 | 32 |
| swine | 3669 | 27 |
| human | 2515 | 17 |
| carnivore | 976 | 58 |
| camel | 569 | 9 |
| bovid | 433 | 24 |
| yinbat | 140 | 68 |
| yangbat | 93 | 65 |
| rodent | 90 | 25 |
| primate | 5 | 2 |
Number of coronaviruses per host group, EID2:
Host groups are mutually exclusive, i.e. primates = non-human primates. Other mammals = misc orders (Proboscidea, Eulipotyphla, Cingulata..)
Not too sure this is very meaningful given how little we know about potential animal hosts of coronaviruses
Sequence data summaries
Excluding partial sequences, summaries of genomic characteristics per coronavirus (taxid) (i.e. values are averaged within each virus so that each virus represents only one data point):
Only for viruses that have whole genome sequences, mean lengths:
Lengths, ENC, GC content between-coronaviruses in spike and other proteins; within-coronaviruses in spike:
Analysis of Variance Table
Response: length
Df Sum Sq Mean Sq F value Pr(>F)
taxid 419 372854860 889868 153.75 < 2.2e-16 ***
Residuals 5552 32133572 5788
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1Fairly consistent sequence lengths of spikes compared to other proteins (expected as pooling all others). Very little within-coronavirus variation.
Analysis of Variance Table
Response: enc
Df Sum Sq Mean Sq F value Pr(>F)
taxid 419 50902 121.484 361.18 < 2.2e-16 ***
Residuals 5552 1867 0.336
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1Average codon bias in spikes falls between bimodal peaks of whole genome sequences. Reasonable variation in spike codon biases between-coronaviruses and within some coronaviruses. Human CoV HKU1 more strongly biased than other CoVs.
Analysis of Variance Table
Response: G + C
Df Sum Sq Mean Sq F value Pr(>F)
taxid 419 149675245 357220 311.7 < 2.2e-16 ***
Residuals 5552 6362848 1146
---
Signif. codes: 0 '***' 0.001 '**' 0.01 '*' 0.05 '.' 0.1 ' ' 1GC content lower in spikes than in whole genome sequences! Some variation between-coronaviruses, and some variation within-coronaviruses. Human CoV HKU1 and Wencheng shrew Cov more strongly biased than other CoVs.
Mean GC content of spike versus known host range count, labelled as human/nonhuman virusNot too informative though useful to see which virus is which?
Spike protein composition
Dinucleotide biases do vary in scale - clearly some biases present (TG overrepresented, CG underepresented). But these are pretty consistent between genera.
Reassuring - biases are more extreme at bridge (3-1) dinucleotides as expected. TG, TA, CA overrepresented, GT, GA, AT underepresented. Still sufficient variability to look for signal in
Most obvious thing is use of different stop codons. But otherwise, fairly consistent across genera agaih..
Not convinced amino acid bias is really useful here - it’s just proportion amino acids in the protein sequence, and it’ll be fairly consistent between CoVs..